Department of Biosciences and Informatics

Research Output 1987 2019

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2018

Glycoreplica peptides

Matsubara, T., Sato, T. & Taki, T., 2018 Jan 1, Methods in Molecular Biology. Humana Press Inc., p. 437-447 11 p. (Methods in Molecular Biology; vol. 1804).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peptides
Carbohydrates
Peptide Library
Glycoconjugates
Bacteriophages
2017

Apoptosis and autophagy

Tashiro, E., Kitagawa, M. & Imoto, M., 2017 May 16, Bioprobes: Biochemical Tools for Investigating Cell Function: Second Edition. Springer Japan, p. 75-113 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autophagy
Apoptosis
Molecules
Homeostasis
Genes
2 Citations (Scopus)

Feeling of Bodily Congruence to Visual Stimuli Improves Motor Imagery Based Brain-Computer Interface Control

Ushiba, J., Miyashita, S., Ono, T., Aono, K., Kodama, M. & Masakado, Y., 2017, Biosystems and Biorobotics. Springer International Publishing, Vol. 15. p. 907-911 5 p. (Biosystems and Biorobotics; vol. 15).

Research output: Chapter in Book/Report/Conference proceedingChapter

Brain computer interface
Electroencephalography
Feedback
Frequency bands
2016

Decarboxylation and Racemization of Unnatural Compounds Using Artificial Enzymes Derived from Arylmalonate Decarboxylase

Miyamoto, K., 2016 May 13, Green Biocatalysis. wiley, p. 59-70 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carboxy-Lyases
Enzymes
Racemases and Epimerases
Biocatalysts
Proteins
2015

How variety of time scales in memory could caenorhabditis elegans, a simple and compact neural circuit organism, form?

Shidara, H. & Oka, K., 2015 Oct 1, Memory Consolidation. Nova Science Publishers, Inc., p. 1-18 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Organism Forms
Caenorhabditis elegans
Learning
Long-Term Memory
Cues
2014
1 Citation (Scopus)

Event-related desynchronization by hand motor imagery is associated with corticospinal excitability: Physiological evidence for BCI based neurorehabilitation

Takemi, M., Masakado, Y., Liu, M. & Ushiba, J., 2014, Biosystems and Biorobotics. Springer International Publishing, Vol. 6. p. 85-94 10 p. (Biosystems and Biorobotics; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioelectric potentials
Electroencephalography
Chemical activation
Association reactions
2013

Optical imaging techniques for investigating the function of earthworm nervous system

Oka, K. & Ogawa, H., 2013 Jan 1, Methods in Neuroethological Research. Springer Japan, p. 89-99 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligochaeta
Optical Imaging
Nervous System
Locomotion
Learning
2012

Bacterial computing and molecular communication

Sakakibara, Y. & Hiyama, S., 2012 Jan 1, Handbook of Natural Computing. Springer Berlin Heidelberg, Vol. 3-4. p. 1204-1232 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Communication
Finite automata
Bacteria
DNA
Turing machines
2011

High Solubility of Random-Sequence Proteins Consisting of Five Kinds of Primitive Amino Acids

Doi, N., Kakukawa, K., Oishi, Y. & Yanagawa, H., 2011 Feb 14, Chemical Synthetic Biology. John Wiley and Sons, p. 119-137 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Solubility
Gel Chromatography
Amino Acids
Proteins
2009
1 Citation (Scopus)

Chemical Biology of Cell Motility Inhibitors

Kawamura, T., Kitagawa, M. & Imoto, M., 2009 Aug 24, Protein Targeting with Small Molecules: Chemical Biology Techniques and Applications. John Wiley and Sons, p. 169-187 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Movement
2007
1 Citation (Scopus)

Enzymatic decarboxylation of synthetic compounds

Miyamoto, K. & Ohta, H., 2007, Future Directions in Biocatalysis. Elsevier, p. 305-343 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decarboxylation
Phosphopyruvate Hydratase
Synthetic Chemistry Techniques
Informatics
Biotechnology
2006

Discovery of arylmalonate decarboxylase and conversion of the function by rational design

Miyamoto, K. & Ohta, H., 2006 Jan 1, Biocatalysis in the Pharmaceutical and Biotechnology Industries. CRC Press, p. 547-561 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carboxy-Lyases
malonyl-CoA decarboxylase
Isomers
Malonates
Decarboxylation
2005
4 Citations (Scopus)

Chitosan

Hashimoto, M., Yang, Z., Koya, Y. & Sato, T., 2005, Non-viral Gene Therapy: Gene Design and Delivery. Springer-Verlag Tokyo, p. 63-74 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chitosan
Genes
Gene Transfer Techniques
Chemical modification
Functional groups
2000

Albumin uptake into endothelial cells in separated flow

Kudo, S., Yamaguchi, R., Sato, M., Oka, K. & Tanishita, K., 2000, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 48. p. 83-84 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Shear stress
Channel flow
Microscopes
Scanning

Distribution of oxygen tension in neocortical areas in the rat somatosensory cortex

Masamoto, K., Oka, K., Kobayashi, H., Sannohe, Y., Takizawa, N. & Tanishita, K., 2000, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 48. p. 295-296 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Rats
Oxygen
Needles
Spatial distribution
Brain
1999
1 Citation (Scopus)

Albumin transport across the endothelial cells under the shear stress applied

Tsuzaka, M., Takenouchi, M., Ikeda, M., Oka, K. & Tanishita, K., 1999, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. ASME, Vol. 42. p. 293-294 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Shear stress
Monolayers
Membranes
Inulin
1 Citation (Scopus)

Using encapsulation to improve the viability of cryopreserved cells

Matsumoto, Y., Morinaga, Y., Ujihira, M., Oka, K. & Tanishita, K., 1999, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. ASME, Vol. 44. p. 57-58 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Latent heat
Alginate
Encapsulation
Freezing
Cells

Variation of wall shear stress direction in aortic arch model

Fujioka, H., Shuto, Y., Oka, K. & Tanishita, K., 1999, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. ASME, Vol. 42. p. 591-592 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Arches
Shear stress

Wall shear stress distribution on the surface of realistic endothelial cell model

Fukushima, S., Nagatsu, A., Kaibara, M., Oka, K. & Tanishita, K., 1999, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. ASME, Vol. 43. p. 39-40 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Velocity measurement
Stress concentration
Shear stress
1998
1 Citation (Scopus)

Determination of microscopic wall shear stress distribution on endothelial cell model

Fukushima, S., Kaibara, M., Deguchi, T., Oka, K., Nishida, M. & Tanishita, K., 1998, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 39. p. 109-110 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Wall flow
Endothelial cells
Physiology
Flow measurement
Flow visualization

Intracellular transport route of albumin in cultured aortic endothelial cells

Ikezawa, K., Ueno, K., Ikeda, M., Oka, K. & Tanishita, K., 1998, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 39. p. 107-108 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells

Microcoaxial electrode for local nitric oxide measurement in biological systems

Kitamura, Y., Uzawa, T., Oka, K., Komai, Y., Ogawa, H., Kobayashi, H., Takizawa, N. & Tanishita, K., 1998, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 39. p. 387-388 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nitric oxide
Biological systems
Electrodes
Hemoglobin
Calibration

Reoxygenation in tumor tissues after X-ray or carbon-12 irradiation

Fukawa, T., Takematsu, K., Oka, K., Miyahara, N., Koike, S., Ando, K., Kobayashi, H. & Tanishita, K., 1998, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 39. p. 371-372 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumors
Irradiation
Tissue
X rays
Carbon

Secondary flow augmentation in intermittent oscillatory flow in model human central airways

Tanaka, G., Ogata, T., Oka, K. & Tanishita, K., 1998, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 39. p. 91-92 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary flow
Color
Gases
1997
5 Citations (Scopus)

Albumin concentration profile inside cultured endothelial cells exposed to shear stress

Kudo, S., Ikezawa, K., Ikeda, M., Oka, K. & Tanishita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 35. p. 547-548 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Laser applications
Endothelial cells
Macromolecules
Cell culture
Shear stress

Effect of shear stress on mitochondrial membrane potential of cultured endothelial cells

Kudo, S., Morigaki, R., Ikeda, M., Oka, K. & Tanishita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 36. p. 63-64 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Iodine compounds
Animal cell culture
Laser applications
Adenosinetriphosphate
Endothelial cells

Heterogeneity of oscillatory flow in a model human central airway

Tanaka, G., Ogata, T., Oka, K. & Tanishita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 35. p. 297-298 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Laser Doppler velocimeters
Biomedical engineering
Velocity measurement
Vortex flow
Reynolds number
2 Citations (Scopus)

Measurement of micro flow field over model endothelial cells

Fukushima, S., Inagi, K., Oka, K. & Tanishita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 36. p. 61-62 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Animal cell culture
Physiological models
Laser applications
Endothelial cells
Flow visualization

Numerical analysis of oscillatory flow and gas transport through a bifurcating airway model

Fujioka, H., Oka, K. & Tanishita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 36. p. 43-44 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Laminar flow
Navier Stokes equations
Numerical analysis
Reynolds number
Mass transfer

Shear stress induced intracellular calcium response in endothelial cells

Abe, T., Oka, K., Matsumura, S., Ikeda, M. & Tanisita, K., 1997, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 35. p. 543-544 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Calcium ion sensors
Laser applications
Endothelial cells
Blood vessels
Cell culture
1996

Compliant effect on the axial gas transport in model airway

Inaba, Y., Fujioka, H., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 177-178 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Laplace transforms
Chemical sensors
Flow of fluids
Carbon dioxide
Gases
4 Citations (Scopus)

Effect of shear stress on albumin uptake into cultured endothelial cells

Kudo, S., Ikezawa, K., Matsumura, S., Ikeda, M., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 209-210 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Shear stress
Macromolecules
Monolayers
Microscopes
3 Citations (Scopus)

Local gas transport rate in oscillatory flow in a model human central airways

Tanaka, G., Ito, J., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 179-180 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gases
Bifurcation (mathematics)
Geometry

Oscillatory flow in a flexible curved tube

Fujioka, H., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 75-76 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluid structure interaction
Flow of fluids
Mathematical models
Geometry
Computer simulation
2 Citations (Scopus)

Transition to turbulence in a bifurcating airway model

Ueda, Y., Okaniwa, T., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 181-182 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Turbulence
Laser Doppler velocimeters
Color

Transition to turbulence in physiologically intermittent flow in an aortic arch model

Sato, Y., Koshiba, J., Oka, K. & Tanishita, K., 1996, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Vol. 33. p. 409-410 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Arches
Turbulence
Laser Doppler velocimeters
Axial flow
Secondary flow