Department of Biosciences and Informatics

Research Output 1987 2020

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2018
5 Citations (Scopus)

Design of Hollow Protein Nanoparticles with Modifiable Interior and Exterior Surfaces

Kawakami, N., Kondo, H., Matsuzawa, Y., Hayasaka, K., Nasu, E., Sasahara, K., Arai, R. & Miyamoto, K., 2018 Sep 17, In : Angewandte Chemie - International Edition. 57, 38, p. 12400-12404 5 p.

Research output: Contribution to journalArticle

Nanoparticles
Proteins
Protein Subunits
Fusion reactions
1 Citation (Scopus)

Developmental Roles and Evolutionary Significance of AMPA-Type Glutamate Receptors

Hirai, S., Hotta, K. & Okado, H., 2018 Jan 1, (Accepted/In press) In : BioEssays.

Research output: Contribution to journalArticle

alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid
Glutamate Receptors
Glutamic Acid
Urochordata
Mammalian Embryo

EEG-based neurofeedback training with shoulder exoskeleton robot assistance triggered by the contralesional primary motor cortex activity in poststroke patients with severe chronic hemiplegia

Takasaki, K., Liu, F., Ogura, M., Okuyama, K., Kawakami, M., Mizuno, K., Kasuga, S., Noda, T., Morimoto, J., Liu, M. & Ushiba, J., 2018 Jan 1, (Accepted/In press) In : Annals of Physical and Rehabilitation Medicine.

Research output: Contribution to journalArticle

Neurofeedback
Hemiplegia
Motor Cortex
Electroencephalography
Motor Activity
2 Citations (Scopus)

Effect of interactions among individuals on the chemotaxis behaviours of Caenorhabditis elegans

Yoshimizu, T., Shidara, H., Ashida, K., Hotta, K. & Oka, K., 2018 Jun 12, In : The Journal of experimental biology. 221

Research output: Contribution to journalArticle

Open Access
chemotaxis
Caenorhabditis elegans
Chemotaxis
pheromones
pheromone
2 Citations (Scopus)

Engineering of DNA polymerase I from Thermus thermophilus using compartmentalized self-replication

Aye, S. L., Fujiwara, K., Ueki, A. & Doi, N., 2018 May 5, In : Biochemical and Biophysical Research Communications. 499, 2, p. 170-176 7 p.

Research output: Contribution to journalArticle

Thermus thermophilus
DNA Polymerase I
spleen exonuclease
Emulsions
Taq Polymerase
3 Citations (Scopus)

Feasibility of task-specific brain-machine interface training for upper-extremity paralysis in patients with chronic hemiparetic stroke

Nishimoto, A., Kawakami, M., Fujiwara, T., Hiramoto, M., Honaga, K., Abe, K., Mizuno, K., Ushiba, J. & Liu, M., 2018 Jan 1, In : Journal of Rehabilitation Medicine. 50, 1, p. 52-58 7 p.

Research output: Contribution to journalArticle

Brain-Computer Interfaces
Upper Extremity
Paralysis
Stroke
Motor Activity
5 Citations (Scopus)

GABA-Induced Intracellular Mg2+ Mobilization Integrates and Coordinates Cellular Information Processing for the Maturation of Neural Networks

Yamanaka, R., Shindo, Y., Hotta, K., Suzuki, K. & Oka, K., 2018 Dec 17, In : Current Biology. 28, 24, p. 3984-3991.e5

Research output: Contribution to journalArticle

Transducers
Automatic Data Processing
neural networks
gamma-Aminobutyric Acid
Neurons
5 Citations (Scopus)

Highly Sensitive Bioluminescent Probe for Thiol Detection in Living Cells

Hemmi, M., Ikeda, Y., Shindo, Y., Nakajima, T., Nishiyama, S., Oka, K., Sato, M., Hiruta, Y., Citterio, D. & Suzuki, K., 2018 Jan 1, (Accepted/In press) In : Chemistry - An Asian Journal.

Research output: Contribution to journalArticle

Sulfhydryl Compounds
Cells
Bioluminescence
Cysteine
Fluorescence
1 Citation (Scopus)

Hoshinoamides A and B, Acyclic Lipopeptides from the Marine Cyanobacterium Caldora penicillata

Iwasaki, A., Tadenuma, T., Sumimoto, S., Shiota, I., Matsubara, T., Saito-Nakano, Y., Nozaki, T., Sato, T. & Suenaga, K., 2018 Nov 26, In : Journal of Natural Products. 81, 11, p. 2545-2552 8 p.

Research output: Contribution to journalArticle

Lipopeptides
Cyanobacteria
Plasmodium falciparum
Cytotoxicity
HeLa Cells
6 Citations (Scopus)

Increasing Elasticity through Changes in the Secondary Structure of Gelatin by Gelation in a Microsized Lipid Space

Sakai, A., Murayama, Y., Fujiwara, K., Fujisawa, T., Sasaki, S., Kidoaki, S. & Yanagisawa, M., 2018 Apr 25, In : ACS Central Science. 4, 4, p. 477-483 7 p.

Research output: Contribution to journalArticle

Gelation
Gelatin
Lipids
Elasticity
Gels
2 Citations (Scopus)

Inhibition of Dr-dut gene causes DNA damage in planarian

Alam, M. S., Moriyama, H. & Matsumoto, M., 2018 Jan 1, (Accepted/In press) In : Molecular Reproduction and Development.

Research output: Contribution to journalArticle

Planarians
DNA Damage
RNA Interference
Genes
Deoxyuridine
7 Citations (Scopus)

Intertemporal Decision-Making Involves Prefrontal Control Mechanisms Associated with Working Memory

Jimura, K., Chushak, M. S., Westbrook, A. & Braver, T. S., 2018 Apr 1, In : Cerebral cortex (New York, N.Y. : 1991). 28, 4, p. 1105-1116 12 p.

Research output: Contribution to journalArticle

Prefrontal Cortex
Short-Term Memory
Reward
Delay Discounting
Magnetic Resonance Imaging
1 Citation (Scopus)

Izenamides A and B, Statine-Containing Depsipeptides, and an Analogue from a Marine Cyanobacterium

Kanamori, Y., Iwasaki, A., Sumimoto, S., Matsubara, T., Sato, T. & Suenaga, K., 2018 Jul 27, In : Journal of Natural Products. 81, 7, p. 1673-1681 9 p.

Research output: Contribution to journalArticle

Depsipeptides
Cyanobacteria
Cathepsin D
MCF-7 Cells
Peptide Hydrolases
2 Citations (Scopus)

Large-scale network integration in the human brain tracks temporal fluctuations in memory encoding performance

Keerativittayayut, R., Aoki, R., Sarabi, M. T., Jimura, K. & Nakahara, K., 2018 Jun 18, In : eLife. 7, e32696.

Research output: Contribution to journalArticle

Brain
Data storage equipment
Task Performance and Analysis
Cognition
Multivariate Analysis
2 Citations (Scopus)

Muscle-selective disinhibition of corticomotor representations using a motor imagery-based brain-computer interface

Takemi, M., Maeda, T., Masakado, Y., Siebner, H. R. & Ushiba, J., 2018 Dec 1, In : NeuroImage. 183, p. 597-605 9 p.

Research output: Contribution to journalArticle

Brain-Computer Interfaces
Imagery (Psychotherapy)
Muscles
Motor Cortex
Wrist
2 Citations (Scopus)

Novel hemagglutinin-binding sulfated oligofucosides and their effect on influenza virus infection

Kosono, S., Kasai, A., Komaba, S., Matsubara, T., Sato, T., Takahashi, D. & Toshima, K., 2018 Jan 1, In : Chemical Communications. 54, 54, p. 7467-7470 4 p.

Research output: Contribution to journalArticle

Hemagglutinins
Viruses
Assays
Ligands
Derivatives
4 Citations (Scopus)
Wavelet Analysis
Fourier Analysis
Electroencephalography
Neurofeedback
Neuronal Plasticity
Imagery (Psychotherapy)
Electroencephalography
Motor Evoked Potentials
Brain-Computer Interfaces
Transcranial Magnetic Stimulation

Prolonged Aftereffect of Visuomotor Adaptation to Gradually Distorted Reality Displayed on a See-Through Head-Mounted Device

Kasuga, S., Mori, R., Kasahara, S., Rekimoto, J. & Ushiba, J., 2018 Jan 1, (Accepted/In press) In : International Journal of Human-Computer Interaction.

Research output: Contribution to journalArticle

learning process
video
paradigm
evidence

Quantitative analysis of sensitivity to a Wnt3a gradient in determination of the pole-to-pole axis of mitotic cells by using a microfluidic device

Hiraiwa, T., Nakai, Y., Yamada, T., Tanimoto, R., Kimura, H., Matsumoto, Y., Miki, N., Hiroi, N. & Funahashi, A., 2018 Jan 1, (Accepted/In press) In : FEBS Open Bio.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Cell Division
Poles
Cells
1 Citation (Scopus)

Responsibility of lipid compositions for the amyloid ß assembly induced by ganglioside nanoclusters in mouse synaptosomal membranes

Matsubara, T., Kojima, T., Fukuda, R., Iijma, K., Hirai, M., Yamamoto, N., Yanagisawa, K. & Sato, T., 2018 Mar 22, (Accepted/In press) In : Polymer Journal. p. 1-8 8 p.

Research output: Contribution to journalArticle

Gangliosides
Nanoclusters
Amyloid
Lipids
Membranes
1 Citation (Scopus)

Resting-state pallidal-cortical oscillatory couplings in patients with predominant phasic and tonic dystonia

Yokochi, F., Kato, K., Iwamuro, H., Kamiyama, T., Kimura, K., Yugeta, A., Okiyama, R., Taniguchi, M., Kumada, S. & Ushiba, J., 2018 May 31, In : Frontiers in Neurology. 9, MAY, 375.

Research output: Contribution to journalArticle

Globus Pallidus
Dystonia
Motor Cortex
Deep Brain Stimulation
Basal Ganglia

Structural Gray Matter Changes in the Hippocampus and the Primary Motor Cortex on An-Hour-to-One- Day Scale Can Predict Arm-Reaching Performance Improvement

Kodama, M., Ono, T., Yamashita, F., Ebata, H., Liu, M., Kasuga, S. & Ushiba, J., 2018 Jun 8, In : Frontiers in Human Neuroscience. 12, 209.

Research output: Contribution to journalArticle

Motor Cortex
Hippocampus
Arm
Learning
Brain
5 Citations (Scopus)
Imagery (Psychotherapy)
Aptitude
Electroencephalography
Psychology

Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model

Aoto, Y., Okumura, K., Hachiya, T., Hase, S., Wakabayashi, Y., Ishikawa, F. & Sakakibara, Y., 2018 Dec 1, In : Scientific Reports. 8, 1, 12994.

Research output: Contribution to journalArticle

Carcinogenesis
Skin
Neoplasms
Genome
Papilloma
1 Citation (Scopus)

Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery

Yamada, T., Suetsugu, Y., Deviatiiarov, R., Gusev, O., Cornette, R., Nesmelov, A., Hiroi, N., Kikawada, T. & Funahashi, A., 2018 Dec 1, In : Scientific Reports. 8, 1, 17941.

Research output: Contribution to journalArticle

Desiccation
Gene Expression Profiling
Cell Line
Trehalose
Fluid Therapy
4 Citations (Scopus)

Transitional correlation between inner-membrane potential and ATP levels of neuronal mitochondria

Suzuki, R., Hotta, K. & Oka, K., 2018 Dec 1, In : Scientific Reports. 8, 1, 2993.

Research output: Contribution to journalArticle

Growth Cones
Membrane Potentials
Mitochondrial Dynamics
Mitochondria
Adenosine Triphosphate
2 Citations (Scopus)

Visual perceptual training reconfigures post-task resting-state functional connectivity with a feature-representation region

Sarabi, M. T., Aoki, R., Tsumura, K., Keerativittayayut, R., Jimura, K. & Nakahara, K., 2018 May 1, In : PLoS One. 13, 5, e0196866.

Research output: Contribution to journalArticle

cortex
magnetic resonance imaging
Brain
learning
Chemical activation
3 Citations (Scopus)

Within-Subject Correlation Analysis to Detect Functional Areas Associated With Response Inhibition

Yamasaki, T., Ogawa, A., Osada, T., Jimura, K. & Konishi, S., 2018 May 22, In : Frontiers in Human Neuroscience. 12, 208.

Research output: Contribution to journalArticle

Gyrus Cinguli
Brain
Cerebellum
Magnetic Resonance Imaging
2017
5 Citations (Scopus)

AMPA glutamate receptors are required for sensory-organ formation and morphogenesis in the basal chordate

Hirai, S., Hotta, K., Kubo, Y., Nishino, A., Okabe, S., Okamura, Y. & Okado, H., 2017 Apr 11, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 15, p. 3939-3944 6 p.

Research output: Contribution to journalArticle

Chordata
Urochordata
AMPA Receptors
Glutamate Receptors
Morphogenesis
2 Citations (Scopus)

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data

Kato, Y., Mori, T., Sato, K., Maegawa, S., Hosokawa, H. & Akutsu, T., 2017 Jan 15, In : Bioinformatics. 33, 2, p. 202-209 8 p.

Research output: Contribution to journalArticle

RNA
Accessibility
Prediction
Interaction
Prediction Model
1 Citation (Scopus)

Antarlides F-H, new members of the antarlide family produced by Streptomyces sp. BB47

Saito, S., Fujimaki, T., Panbangred, W., Sawa, R., Igarashi, Y. & Imoto, M., 2017 May 1, In : Journal of Antibiotics. 70, 5, p. 595-600 6 p.

Research output: Contribution to journalArticle

Androgen Receptor Antagonists
Androgen Receptors
Streptomyces
Castration
Prostatic Neoplasms
1 Citation (Scopus)

Apoptosis-inducing activity and antiproliferative effect of Paeoniflorigenone from moutan cortex

Huang, Y., Ohno, O., Suenaga, K. & Miyamoto, K., 2017, In : Bioscience, Biotechnology and Biochemistry. 81, 6, p. 1106-1113 8 p.

Research output: Contribution to journalArticle

Chinese Herbal Drugs
Apoptosis
Caspase Inhibitors
Chinese Traditional Medicine
Plant Extracts
3 Citations (Scopus)
Ciona intestinalis
Urochordata
Embryonic Development
Chordata
Calcium
1 Citation (Scopus)

Click reaction based on the biosynthesis of firefly luciferin

Toyama, T., Saitoh, T., Takahashi, Y., Oka, K., Citterio, D., Suzuki, K. & Nishiyama, S., 2017, In : Chemistry Letters. 46, 5, p. 753-755 3 p.

Research output: Contribution to journalArticle

Firefly Luciferin
Biosynthesis
Cysteine
Thiazoles
Nitriles
7 Citations (Scopus)

Compartmentalized cGMP responses of olfactory sensory neurons in Caenorhabditis elegans

Shidara, H., Hotta, K. & Oka, K., 2017 Apr 5, In : Journal of Neuroscience. 37, 14, p. 3753-3763 11 p.

Research output: Contribution to journalArticle

Olfactory Receptor Neurons
Cyclic GMP
Caenorhabditis elegans
Cilia
Carisoprodol
12 Citations (Scopus)

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data

Jayakumar, V. & Sakakibara, Y., 2017 Nov 2, In : Briefings in Bioinformatics. 20, 3, p. 866-876 11 p., bbx147.

Research output: Contribution to journalArticle

Open Access
Genes
Genome
Genome Size
Sequence Analysis
Technology
9 Citations (Scopus)

Cortical control of object-specific grasp relies on adjustments of both activity and effective connectivity: A common marmoset study

Tia, B., Takemi, M., Kosugi, A., Castagnola, E., Ansaldo, A., Nakamura, T., Ricci, D., Ushiba, J., Fadiga, L. & Iriki, A., 2017, (Accepted/In press) In : Journal of Physiology.

Research output: Contribution to journalArticle

Callithrix
Hand Strength
Hand
Primates
Fingers
1 Citation (Scopus)

Corticomuscular coherence reflects somatosensory feedback gains during motor adaptation

Kasuga, S., Momose, N., Ushiyama, J. & Ushiba, J., 2017, (Accepted/In press) In : Neuroscience Research.

Research output: Contribution to journalArticle

Muscles
Reflex
Hand
Learning
Sensorimotor Cortex
3 Citations (Scopus)

DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions

Aoto, Y., Hachiya, T., Okumura, K., Hase, S., Sato, K., Wakabayashi, Y. & Sakakibara, Y., 2017 Nov 1, In : PLoS One. 12, 11, e0188285.

Research output: Contribution to journalArticle

Genes
transcriptome
Transcriptome
Gene expression
High-Throughput Nucleotide Sequencing
14 Citations (Scopus)

Design of Glycopolymers Carrying Sialyl Oligosaccharides for Controlling the Interaction with the Influenza Virus

Nagao, M., Fujiwara, Y., Matsubara, T., Hoshino, Y., Sato, T. & Miura, Y., 2017 Dec 11, In : Biomacromolecules. 18, 12, p. 4385-4392 8 p.

Research output: Contribution to journalArticle

Oligosaccharides
Viruses
Polymers
Sugars
Hydrophilicity
26 Citations (Scopus)

DNA cytoskeleton for stabilizing artificial cells

Kurokawa, C., Fujiwara, K., Morita, M., Kawamata, I., Kawagishi, Y., Sakai, A., Murayama, Y., Nomura, S. I. M., Murata, S., Takinoue, M. & Yanagisawa, M., 2017 Jul 11, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 28, p. 7228-7233 6 p.

Research output: Contribution to journalArticle

Artificial Cells
Cytoskeleton
DNA
Nanostructures
Gels
11 Citations (Scopus)

Human-derived fusogenic peptides for the intracellular delivery of proteins

Sudo, K., Niikura, K., Iwaki, K., Kohyama, S., Fujiwara, K. & Doi, N., 2017 Jun 10, In : Journal of Controlled Release. 255, p. 1-11 11 p.

Research output: Contribution to journalArticle

Peptides
Proteins
Germ Cells
Galactosidases
Cell-Penetrating Peptides
4 Citations (Scopus)
Protein Kinase C
Isoenzymes
Cells
Cell Line
Neoplasms
7 Citations (Scopus)
Ankle
Individuality
Muscles
Electromyography
Electroencephalography
9 Citations (Scopus)
Isometric Contraction
Interneurons
Individuality
Electroencephalography
H-Reflex
4 Citations (Scopus)

In vitro and in vivo gene delivery using chitosan/hyaluronic acid nanoparticles: Influences of molecular mass of hyaluronic acid and lyophilization on transfection efficiency

Sato, T., Nakata, M., Yang, Z., Torizuka, Y., Kishimoto, S. & Ishihara, M., 2017 Aug 1, In : Journal of Gene Medicine. 19, 8, e2968.

Research output: Contribution to journalArticle

Freeze Drying
Chitosan
Hyaluronic Acid
Nanoparticles
Transfection
4 Citations (Scopus)

In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile

Fujiwara, K., Sawamura, T., Niwa, T., Deyama, T., Nomura, S. I. M., Taguchi, H. & Doi, N., 2017 Nov 2, In : Nucleic Acids Research. 45, 19, p. 11449-11458 10 p.

Research output: Contribution to journalArticle

Bacterial Genomes
Genome
RNA
Cell Extracts
In Vitro Techniques
4 Citations (Scopus)

Ipsilateral EEG mu rhythm reflects the excitability of uncrossed pathways projecting to shoulder muscles

Hasegawa, K., Kasuga, S., Takasaki, K., Mizuno, K., Liu, M. & Ushiba, J., 2017 Aug 25, In : Journal of NeuroEngineering and Rehabilitation. 14, 1, 85.

Research output: Contribution to journalArticle

Electroencephalography
Imagery (Psychotherapy)
Pyramidal Tracts
Muscles
Motor Evoked Potentials
6 Citations (Scopus)

Kohamamides A, B, and C, Cyclic Depsipeptides from an Okeania sp. Marine Cyanobacterium

Iwasaki, A., Shiota, I., Sumimoto, S., Matsubara, T., Sato, T. & Suenaga, K., 2017 Jun 23, In : Journal of Natural Products. 80, 6, p. 1948-1952 5 p.

Research output: Contribution to journalArticle

Depsipeptides
Cyanobacteria
HL-60 Cells
Military Personnel
Cytotoxicity