Department of Biosciences and Informatics

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2015
1 Citation (Scopus)

Neural depolarization triggers Mg2+ influx in rat hippocampal neurons

Yamanaka, R., Shindo, Y., Karube, T., Hotta, K., Suzuki, K. & Oka, K., 2015 Dec 3, In : Neuroscience. 310, p. 731-741 11 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Nordihydroguaiaretic acid disrupts the antioxidant ability of Helicobacter pylori through the repression of SodB activity in vitro

Tsugawa, H., Mori, H., Matsuzaki, J., Masaoka, T., Hirayama, T., Nagasawa, H., Sakakibara, Y., Suematsu, M. & Suzuki, H., 2015 Jan 1, In : BioMed Research International. 2015, 734548.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Peptide sequences converting polyglutamine into a prion in yeast

Odani, W., Urata, K., Okuda, M., Okuma, S., Koyama, H., Pack, C. G., Fujiwara, K., Nojima, T., Kinjo, M., Kawai-Noma, S. & Taguchi, H., 2015 Feb, In : FEBS Journal. 282, 3, p. 477-490 14 p.

Research output: Contribution to journalArticle

Photosynthetic production of enantioselective biocatalysts

Bartsch, M., Gassmeyer, S. K., Köninger, K., Igarashi, K., Liauw, P., Dyczmons-Nowaczyk, N., Miyamoto, K., Nowaczyk, M. M. & Kourist, R., 2015 Apr 15, In : Microbial Cell Factories. 14, 1, 53.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis

Sato, K., Kuroki, Y., Kumita, W., Fujiyama, A., Toyoda, A., Kawai, J., Iriki, A., Sasaki, E., Okano, H. & Sakakibara, Y., 2015 Nov 20, In : Scientific reports. 5, 16894.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Sensorimotor event-related desynchronization represents the excitability of human spinal motoneurons

Takemi, M., Masakado, Y., Liu, M. & Ushiba, J., 2015 Jun 5, In : Neuroscience. 297, p. 58-67 10 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

SMK-17, a MEK1/2-specific inhibitor, selectively induces apoptosis in β-catenin-mutated tumors

Kiga, M., Nakayama, A., Shikata, Y., Sasazawa, Y., Murakami, R., Nakanishi, T., Tashiro, E. & Imoto, M., 2015 Feb 2, In : Scientific Reports. 5, 8155.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Spatiotemporal quantification of subcellular ATP levels in a single HeLa cell during changes in morphology

Suzuki, R., Hotta, K. & Oka, K., 2015 Nov 17, In : Scientific Reports. 5, 16874.

Research output: Contribution to journalArticle

11 Citations (Scopus)

STD-NMR-Based Protein Engineering of the Unique Arylpropionate-Racemase AMDase G74C

Gaßmeyer, S. K., Yoshikawa, H., Enoki, J., Hülsemann, N., Stoll, R., Miyamoto, K. & Kourist, R., 2015 Sep 1, In : ChemBioChem. 16, 13, p. 1943-1949 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Substrate specificity of an esterase from the archaeon Sulfolobus tokodaii bearing a GGG(A)X motif

Wada, R., Ozaki, M., Kumon, T., Ohta, H. & Miyamoto, K., 2015 May 4, In : Biocatalysis and Biotransformation. 33, 3, p. 188-190 3 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The principles of whole-cell modeling

Karr, J. R., Takahashi, K. & Funahashi, A., 2015 Oct 1, In : Current Opinion in Microbiology. 27, p. 18-24 7 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Transcranial direct current stimulation enhances mu rhythm desynchronization during motor imagery that depends on handedness

Kasuga, S., Matsushika, Y., Kasashima-Shindo, Y., Kamatani, D., Fujiwara, T., Liu, M. & Ushiba, J., 2015 Jul 4, In : Laterality. 20, 4, p. 453-468 16 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Whole-genome sequencing and comparative genome analysis of bacillus subtilis strains isolated from non-salted fermented soybean foods

Kamada, M., Hase, S., Fujii, K., Miyake, M., Sato, K., Kimura, K. & Sakakibara, Y., 2015 Oct 27, In : PLoS One. 10, 10, e0141369.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2014

5-Lipoxygenase and cysteinyl leukotriene receptor 1 regulate epidermal growth factor-induced cell migration through Tiam1 upregulation and Rac1 activation

Magi, S., Takemoto, Y., Kobayashi, H., Kasamatsu, M., Akita, T., Tanaka, A., Takano, K., Tashiro, E., Igarashi, Y. & Imoto, M., 2014 Mar, In : Cancer science. 105, 3, p. 290-296 7 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Assessing uncertainty in model parameters based on sparse and noisy experimental data

Hiroi, N., Swat, M. & Funahashi, A., 2014 Jan 1, In : Frontiers in Physiology. 5 APR, Article 128.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Chemical genomic-based pathway analyses for epidermal growth factor-mediated signaling in migrating cancer cells

Magi, S., Saeki, Y., Kasamatsu, M., Tashiro, E. & Imoto, M., 2014 May 12, In : PloS one. 9, 5, e96776.

Research output: Contribution to journalArticle

6 Citations (Scopus)
6 Citations (Scopus)

Conversion of a chaperonin GroEL-independent protein into an obligate substrate

Ishimoto, T., Fujiwara, K., Niwa, T. & Taguchi, H., 2014 Nov 14, In : Journal of Biological Chemistry. 289, 46, p. 32073-32080 8 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Design and synthesis of a FlAsH-type Mg2+ fluorescent probe for specific protein labeling

Fujii, T., Shindo, Y., Hotta, K., Citterio, D., Nishiyama, S., Suzuki, K. & Oka, K., 2014 Feb 12, In : Journal of the American Chemical Society. 136, 6, p. 2374-2381 8 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Different strategy of hand choice after learning of constant and incremental dynamical perturbation in arm reaching

Habagishi, C., Kasuga, S., Otaka, Y., Liu, M. & Ushiba, J., 2014 Feb 24, In : Frontiers in Human Neuroscience. 8, 1 FEB, 92.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Draft genome sequence of Kozakia baliensis SR-745, the first sequenced Kozakia strain from the family Acetobacteraceae

Schmid, J., Koenig, S., Pick, A., Steffler, F., Yoshida, S., Miyamoto, K. & Sieber, V., 2014 Jan 1, In : Genome Announcements. 2, 3, e00594-14.

Research output: Contribution to journalArticle

1 Citation (Scopus)

DrRad51 is required for chiasmata formation in meiosis in planarian Dugesia ryukyuensis

Chinone, A. & Matsumoto, M., 2014 May, In : Molecular reproduction and development. 81, 5, p. 409-421 13 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Efficacy of brain-computer interface-driven neuromuscular electrical stimulation for chronic paresis after stroke

Mukaino, M., Ono, T., Shindo, K., Fujiwara, T., Ota, T., Kimura, A., Liu, M. & Ushiba, J., 2014 Jan 1, In : Journal of rehabilitation medicine. 46, 4, p. 378-382 5 p.

Research output: Contribution to journalArticle

Open Access
48 Citations (Scopus)

Expression of Nephrin homologue in the freshwater planarian, Dugesia japonica

Nakamura, T., Takagi, S., Matsumoto, M., Tashiro, F., Sakai, T. & Ichimura, K., 2014 Jan 1, In : Acta Histochemica et Cytochemica. 47, 6, p. 303-310 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Functional recovery from chronic writer's cramp by brain-computer interface rehabilitation: A case report

Hashimoto, Y., Ota, T., Mukaino, M., Liu, M. & Ushiba, J., 2014, In : BMC Neuroscience. 15, 1, 103.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Identification of licopyranocoumarin and glycyrurol from herbal medicines as neuroprotective compounds for Parkinson's disease

Fujimaki, T., Saiki, S., Tashiro, E., Yamada, D., Kitagawa, M., Hattori, N. & Imoto, M., 2014 Jun 24, In : PloS one. 9, 6, e100395.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Identification of oscillatory firing neurons associated with locomotion in the earthworm through synapse imaging

Shimoi, T., Mizutani, K., Kojima, D., Kitamura, Y., Hotta, K., Ogawa, H. & Oka, K., 2014 May 30, In : Neuroscience. 268, p. 149-158 10 p.

Research output: Contribution to journalArticle

Meis1 regulates epidermal stem cells and is required for skin tumorigenesis

Okumura, K., Saito, M., Isogai, E., Aoto, Y., Hachiya, T., Sakakibara, Y., Katsuragi, Y., Hirose, S., Kominami, R., Goitsuka, R., Nakamura, T. & Wakabayashi, Y., 2014 Jul 11, In : PloS one. 9, 7, e102111.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Multimodal Sensory Feedback Associated with Motor Attempts Alters BOLD Responses to Paralyzed Hand Movement in Chronic Stroke Patients

Ono, T., Tomita, Y., Inose, M., Ota, T., Kimura, A., Liu, M. & Ushiba, J., 2014, In : Brain Topography. 28, 2, p. 340-351 12 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Multiple patterns of polymer gels in microspheres due to the interplay among phase separation, wetting, and gelation

Yanagisawa, M., Nigorikawa, S., Sakaue, T., Fujiwara, K. & Tokita, M., 2014 Nov 11, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 45, p. 15894-15899 6 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Neovessel formation promotes liver fibrosis via providing latent transforming growth factor-β

Sakata, K., Eda, S., Lee, E. S., Hara, M., Imoto, M. & Kojima, S., 2014 Jan 17, In : Biochemical and Biophysical Research Communications. 443, 3, p. 950-956 7 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri

Manni, L., Gasparini, F., Hotta, K., Ishizuka, K. J., Ricci, L., Tiozzo, S., Voskoboynik, A. & Dauga, D., 2014 May 1, In : PloS one. 9, 5, e96434.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Photodegradation of amyloid β and reduction of its cytotoxicity to PC12 cells using porphyrin derivatives

Hirabayashi, A., Shindo, Y., Oka, K., Takahashi, D. & Toshima, K., 2014 Jul 24, In : Chemical Communications. 50, 67, p. 9543-9546 4 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Planarian D-amino acid oxidase is involved in ovarian development during sexual induction

Maezawa, T., Tanaka, H., Nakagawa, H., Ono, M., Aoki, M., Matsumoto, M., Ishida, T., Horiike, K. & Kobayashi, K., 2014 May, In : Mechanisms of Development. 132, 1, p. 69-78 10 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Sexually dimorphic activation of dopaminergic areas depends on affiliation during courtship and pair formation

Iwasaki, M., Poulsen, T. M., Oka, K. & Hessler, N. A., 2014 Jun 11, In : Frontiers in Behavioral Neuroscience. 8, JUNE, 210.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA Display

Nagata, T., Shirakawa, K., Kobayashi, N., Shiheido, H., Tabata, N., Sakuma-Yonemura, Y., Horisawa, K., Katahira, M., Doi, N. & Yanagawa, H., 2014 Oct 2, In : PloS one. 9, 10, e109163.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Synthesis and influenza virus inhibitory activities of carbosilane dendrimers peripherally functionalized with hemagglutinin-binding peptide

Hatano, K., Matsubara, T., Muramatsu, Y., Ezure, M., Koyama, T., Matsuoka, K., Kuriyama, R., Kori, H. & Sato, T., 2014 Oct 23, In : Journal of Medicinal Chemistry. 57, 20, p. 8332-8339 8 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Three-dimensional culture using human plasma-medium gel with fragmin/protamine microparticles for proliferation of various human cells

Kishimoto, S., Ishihara, M., Takikawa, M., Takikawa, M., Sumi, Y., Nakamura, S., Fujita, M., Sato, T. & Kiyosawa, T., 2014 Oct 1, In : Cytotechnology. 66, 5, p. 791-802 12 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Three-dimensional motion analysis of arm-reaching movements in healthy and hemispinalized common marmosets

Takemi, M., Kondo, T., Yoshino-Saito, K., Sekiguchi, T., Kosugi, A., Kasuga, S., Okano, H. J., Okano, H. & Ushiba, J., 2014 Sep 22, In : Behavioural Brain Research. 275, p. 259-268 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Toward high-throughput screening of NAD(P)-dependent oxidoreductases using boron-doped diamond microelectrodes and microfluidic devices

Oyobiki, R., Kato, T., Katayama, M., Sugitani, A., Watanabe, T., Einaga, Y., Matsumoto, Y., Horisawa, K. & Doi, N., 2014 Oct 7, In : Analytical chemistry. 86, 19, p. 9570-9575 6 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Triploid planarian reproduces truly bisexually with euploid gametes produced through a different meiotic system between sex

Chinone, A., Nodono, H. & Matsumoto, M., 2014 Jun, In : Chromosoma. 123, 3, p. 265-272 8 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Ubiquinone-rhodol (UQ-Rh) for fluorescence imaging of NAD(P)H through intracellular activation

Komatsu, H., Shindo, Y., Oka, K., Hill, J. P. & Ariga, K., 2014 Apr 7, In : Angewandte Chemie - International Edition. 53, 15, p. 3993-3995 3 p.

Research output: Contribution to journalArticle

41 Citations (Scopus)

Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads

Kamada, M., Hase, S., Sato, K., Toyoda, A., Fujiyama, A. & Sakakibara, Y., 2014 Oct 16, In : PloS one. 9, 10, e109999.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Xanthohumol suppresses oestrogen-signalling in breast cancer through the inhibition of BIG3-PHB2 interactions

Yoshimaru, T., Komatsu, M., Tashiro, E., Imoto, M., Osada, H., Miyoshi, Y., Honda, J., Sasa, M. & Katagiri, T., 2014 Dec 8, In : Scientific reports. 4, 7355.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2013

A bicyclic 1-deoxygalactonojirimycin derivative as a novel pharmacological chaperone for GM1 gangliosidosis

Takai, T., Higaki, K., Aguilar-Moncayo, M., Mena-Barragán, T., Hirano, Y., Yura, K., Yu, L., Ninomiya, H., García-Moreno, M. I., Sakakibara, Y., Ohno, K., Nanba, E., Ortiz Mellet, C., García Fernández, J. M. & Suzuki, Y., 2013 Mar, In : Molecular Therapy. 21, 3, p. 526-532 7 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Age-related differences in cognitive function for interlimb coordination during split-belt walking: A pilot study

Saito, M., Hyodo, M., Masakado, Y., Tomita, Y. & Ushiba, J., 2013 Feb 20, In : Somatosensory and Motor Research. 30, 1, p. 56-63 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed

Kobayashi, J., Shidara, H., Morisawa, Y., Kawakami, M., Tanahashi, Y., Hotta, K. & Oka, K., 2013 Aug 26, In : Neuroscience Letters. 548, p. 261-264 4 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

An extended genovo metagenomic assembler by incorporating paired-end information

Afiahayati, Sato, K. & Sakakibara, Y., 2013 Dec 2, In : PeerJ. 2013, 1, e196.

Research output: Contribution to journalArticle

8 Citations (Scopus)