Department of Biosciences and Informatics

2022

Brain-machine Interface (BMI)-based Neurorehabilitation for Post-stroke Upper Limb Paralysis

Liu, M. & Ushiba, J., 2022, In: Keio Journal of Medicine. 71, 4, p. 82-92 11 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Citation (Scopus)

Cell-Size Space Regulates the Behavior of Confined Polymers: From Nano- and Micromaterials Science to Biology

Yanagisawa, M., Watanabe, C., Yoshinaga, N. & Fujiwara, K., 2022 Oct 4, In: Langmuir. 38, 39, p. 11811-11827 17 p.

Research output: Contribution to journal › Review article › peer-review

3 Citations (Scopus)

Peptide mimotopes to emulate carbohydrates

Matsubara, T., 2022 Sept 21, In: Chemical Society Reviews. 51, 19, p. 8160-8173 14 p.

Research output: Contribution to journal › Review article › peer-review

1 Citation (Scopus)

2021

Androgen receptor antagonists produced by Streptomyces overcome resistance to enzalutamide

Imoto, M., Fujimaki, T., Saito, S. & Tashiro, E., 2021 Oct, In: Journal of Antibiotics. 74, 10, p. 706-716 11 p.

Research output: Contribution to journal › Review article › peer-review

1 Citation (Scopus)

Can Neuroscience Provide a New Foundation for the Rorschach Variables?

Jimura, K., Asari, T. & Nakamura, N., 2021 Sept, In: Rorschachiana. 42, 2, p. 143-165 23 p.

Research output: Contribution to journal › Review article › peer-review

6 Citations (Scopus)

Genome-wide role of hsf1 in transcriptional regulation of desiccation tolerance in the anhydrobiotic cell line, pv11

Tokumoto, S., Miyata, Y., Deviatiiarov, R., Yamada, T. G., Hiki, Y., Kozlova, O., Yoshida, Y., Cornette, R., Funahashi, A., Shagimardanova, E., Gusev, O. & Kikawada, T., 2021 Jun 1, In: International journal of molecular sciences. 22, 11, 5798.

Research output: Contribution to journal › Review article › peer-review

Open Access

4 Citations (Scopus)

Sexual reproductive behaviours of tardigrades: a review

Sugiura, K. & Matsumoto, M., 2021, In: Invertebrate Reproduction and Development. 65, 4, p. 279-287 9 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Citation (Scopus)

Small molecule-based alkaline-earth metal ion fluorescent probes for imaging intracellular and intercellular multiple signals

Hiruta, Y., Shindo, Y., Oka, K. & Citterio, D., 2021 May, In: Chemistry Letters. 50, 5, p. 870-887 18 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

3 Citations (Scopus)

Target protein-oriented isolations for bioactive natural products

Arai, M. A., 2021 Jun 1, In: Chemical and Pharmaceutical Bulletin. 69, 6, p. 503-515 13 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Citation (Scopus)

Target protein-oriented isolations for chemical biology based on natural products

Arai, M. A. & Ishibashi, M., 2021 Jul 1, In: Yuki Gosei Kagaku Kyokaishi/Journal of Synthetic Organic Chemistry. 79, 7, p. 684-693 10 p.

Research output: Contribution to journal › Review article › peer-review

2020

SBML Level 3: an extensible format for the exchange and reuse of biological models

Keating, S. M., Waltemath, D., König, M., Zhang, F., Dräger, A., Chaouiya, C., Bergmann, F. T., Finney, A., Gillespie, C. S., Helikar, T., Hoops, S., Malik-Sheriff, R. S., Moodie, S. L., Moraru, I. I., Myers, C. J., Naldi, A., Olivier, B. G., Sahle, S., Schaff, J. C., Smith, L. P., & 121 othersSwat, M. J., Thieffry, D., Watanabe, L., Wilkinson, D. J., Blinov, M. L., Begley, K., Faeder, J. R., Gómez, H. F., Hamm, T. M., Inagaki, Y., Liebermeister, W., Lister, A. L., Lucio, D., Mjolsness, E., Proctor, C. J., Raman, K., Rodriguez, N., Shaffer, C. A., Shapiro, B. E., Stelling, J., Swainston, N., Tanimura, N., Wagner, J., Meier-Schellersheim, M., Sauro, H. M., Palsson, B., Bolouri, H., Kitano, H., Funahashi, A., Hermjakob, H., Doyle, J. C., Hucka, M., Adams, R. R., Allen, N. A., Angermann, B. R., Antoniotti, M., Bader, G. D., Červený, J., Courtot, M., Cox, C. D., Dalle Pezze, P., Demir, E., Denney, W. S., Dharuri, H., Dorier, J., Drasdo, D., Ebrahim, A., Eichner, J., Elf, J., Endler, L., Evelo, C. T., Flamm, C., Fleming, R. M. T., Fröhlich, M., Glont, M., Gonçalves, E., Golebiewski, M., Grabski, H., Gutteridge, A., Hachmeister, D., Harris, L. A., Heavner, B. D., Henkel, R., Hlavacek, W. S., Hu, B., Hyduke, D. R., de Jong, H., Juty, N., Karp, P. D., Karr, J. R., Kell, D. B., Keller, R., Kiselev, I., Klamt, S., Klipp, E., Knüpfer, C., Kolpakov, F., Krause, F., Kutmon, M., Laibe, C., Lawless, C., Li, L., Loew, L. M., Machne, R., Matsuoka, Y., Mendes, P., Mi, H., Mittag, F., Monteiro, P. T., Natarajan, K. N., Nielsen, P. M. F., Nguyen, T., Palmisano, A., Pettit, J. B., Pfau, T., Phair, R. D., Radivoyevitch, T., Rohwer, J. M., Ruebenacker, O. A., Saez-Rodriguez, J., Scharm, M., Schmidt, H., Schreiber, F., Schubert, M., Schulte, R., Sealfon, S. C., Smallbone, K., Soliman, S., Stefan, M. I., Sullivan, D. P., Takahashi, K., Teusink, B., Tolnay, D., Vazirabad, I., von Kamp, A., Wittig, U., Wrzodek, C., Wrzodek, F., Xenarios, I., Zhukova, A. & Zucker, J., 2020 Aug 1, In: Molecular systems biology. 16, 8, e9110.

Research output: Contribution to journal › Review article › peer-review

Open Access

85 Citations (Scopus)

2019

Chemistry and biology for the small molecules targeting characteristics of cancer cells

Imoto, M., 2019, In: Bioscience, Biotechnology and Biochemistry. 83, 1, p. 10-19 10 p.

Research output: Contribution to journal › Review article › peer-review

2 Citations (Scopus)

Screening and identification of inhibitors of endoplasmic reticulum stress-induced activation of the IRE1α-XBP1 branch

Tashiro, E., 2019 Dec 1, In: Journal of Antibiotics. 72, 12, p. 899-905 7 p.

Research output: Contribution to journal › Review article › peer-review

5 Citations (Scopus)

2018

Brain-computer interfaces for post-stroke motor rehabilitation: a meta-analysis

Cervera, M. A., Soekadar, S. R., Ushiba, J., Millán, J. D. R., Liu, M., Birbaumer, N. & Garipelli, G., 2018 May, In: Annals of Clinical and Translational Neurology. 5, 5, p. 651-663 13 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

219 Citations (Scopus)

Developmental Roles and Evolutionary Significance of AMPA-Type Glutamate Receptors

Hirai, S., Hotta, K. & Okado, H., 2018 Sept, In: BioEssays. 40, 9, 1800028.

Research output: Contribution to journal › Review article › peer-review

2 Citations (Scopus)

Professor Hamao Umezawa opened up a new road for the development of molecularly targeted therapeutic drugs for cancers

Imoto, M., 2018 Jan 1, In: Journal of Antibiotics. 71, 1, p. 37-38 2 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Citation (Scopus)

Single micrometer-sized gels: Unique mechanics and characters for applications

Yanagisawa, M., Watanabe, C. & Fujiwara, K., 2018 Jun, In: Gels. 4, 2, 29.

Research output: Contribution to journal › Review article › peer-review

Open Access

10 Citations (Scopus)

2016

Arylmalonate decarboxylase—a highly selective bacterial biocatalyst with unknown function

Miyamoto, K. & Kourist, R., 2016 Oct 1, In: Applied Microbiology and Biotechnology. 100, 20, p. 8621-8631 11 p.

Research output: Contribution to journal › Review article › peer-review

8 Citations (Scopus)

Chemistry and biology of the compounds that modulate cell migration

Tashiro, E. & Imoto, M., 2016 Mar 1, In: Journal of Industrial Microbiology and Biotechnology. 43, 2-3, p. 213-219 7 p.

Research output: Contribution to journal › Review article › peer-review

1 Citation (Scopus)

Simulation technology and its application in systems biology

Funahashi, A. & Hiroi, N., 2016, In: Folia Pharmacologica Japonica. 147, 2, p. 101-106 6 p.

Research output: Contribution to journal › Review article › peer-review

2015

The principles of whole-cell modeling

Karr, J. R., Takahashi, K. & Funahashi, A., 2015 Oct 1, In: Current Opinion in Microbiology. 27, p. 18-24 7 p.

Research output: Contribution to journal › Review article › peer-review

48 Citations (Scopus)

2014

Enzymatic decarboxylation-An emerging reaction for chemicals production from renewable resources

Kourist, R., Guterl, J. K., Miyamoto, K. & Sieber, V., 2014 Mar, In: ChemCatChem. 6, 3, p. 689-701 13 p.

Research output: Contribution to journal › Review article › peer-review

50 Citations (Scopus)

Introducing micrometer-sized artificial objects into live cells: A method for cell-giant unilamellar vesicle electrofusion

Saito, A. C., Ogura, T., Fujiwara, K., Murata, S. & Nomura, S. I. M., 2014 Sept 17, In: PloS one. 9, 9, e106853.

Research output: Contribution to journal › Review article › peer-review

19 Citations (Scopus)

2012

Potential of peptides as inhibitors and mimotopes: Selection of carbohydrate-mimetic peptides from phage display libraries

Matsubara, T., 2012, In: Journal of Nucleic Acids. 2012, 740982.

Research output: Contribution to journal › Review article › peer-review

23 Citations (Scopus)

2009

Chaperone therapy for neuronopathic lysosomal diseases: Competitive inhibitors as chemical chaperones for enhancement of mutant enzyme activities

Suzuki, Y., Ogawa, S. & Sakakibara, Y., 2009, In: Perspectives in Medicinal Chemistry. 2009, 3, p. 7-19 13 p.

Research output: Contribution to journal › Review article › peer-review

96 Citations (Scopus)

The Systems Biology Graphical Notation

Novère, N. L., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K., Aladjem, M. I., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villéger, A., Boyd, S. E., Calzone, L., Courtot, M., & 19 othersDogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K. & Kitano, H., 2009 Aug, In: Nature Biotechnology. 27, 8, p. 735-741 7 p.

Research output: Contribution to journal › Review article › peer-review

627 Citations (Scopus)

2008

Bioprobe generation from microbial origin for chemical biology study

Imoto, M., 2008, In: Folia Pharmacologica Japonica. 132, 1, p. 26-30 5 p.

Research output: Contribution to journal › Review article › peer-review

Egg and sperm recognition systems during fertilization

Hirohashi, N., Kamei, N., Kubo, H., Sawada, H., Matsumoto, M. & Hoshi, M., 2008 Jun, In: Development Growth and Differentiation. 50, SUPPL. 1, p. S221-S238

Research output: Contribution to journal › Review article › peer-review