Faculty of Environment and Information Studies

Research Output 1981 2019

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2019

Adaptation to HIF1a deletion in hypoxic cancer cells by upregulation of GLUT14 and creatine metabolism

Valli, A., Morotti, M., Zois, C. E., Albers, P. K., Soga, T., Feldinger, K., Fischer, R., Frejno, M., McIntyre, A., Bridges, E., Haider, S., Buffa, F. M., Baban, D., Rodriguez, M., Yanes, O., Whittington, H. J., Lake, H. A., Zervou, S., Lygate, C. A., Kessler, B. M. & 1 others, Harris, A. L., 2019 Jul 1, In : Molecular Cancer Research. 17, 7, p. 1531-1544 14 p.

Research output: Contribution to journalArticle

Open Access
Creatine
Up-Regulation
Glycolysis
Neoplasms
Phosphofructokinases

A metabolic profile of routine needle biopsies identified tumor type specific metabolic signatures for breast cancer stratification: a pilot study

Harada-Shoji, N., Soga, T., Tada, H., Miyashita, M., Harada, M., Watanabe, G., Hamanaka, Y., Sato, A., Suzuki, T., Suzuki, A. & Ishida, T., 2019 Nov 1, In : Metabolomics. 15, 11, 147.

Research output: Contribution to journalArticle

Metabolome
Biopsy
Needle Biopsy
Metabolites
arginine glutamate
Protein Phosphatase 2
AMP-Activated Protein Kinases
Desiccation
Phosphorylation
Protein Phosphatase 1

Anti-tumor effects and potential therapeutic response biomarkers in α-emitting meta- 211 At-astato-benzylguanidine therapy for malignant pheochromocytoma explored by RNA-sequencing

Ohshima, Y., Kono, N., Yokota, Y., Watanabe, S., Sasaki, I., Ishioka, N. S., Sakashita, T. & Arakawa, K., 2019 Jan 1, In : Theranostics. 9, 6, p. 1538-1549 12 p.

Research output: Contribution to journalArticle

Open Access
RNA Sequence Analysis
Pheochromocytoma
Therapeutic Uses
Biomarkers
Neoplasms

Association between dyslipidemia and plasma levels of branched-chain amino acids in the Japanese population without diabetes mellitus

Fukushima, K., Harada, S., Takeuchi, A., Kurihara, A., Iida, M., Fukai, K., Kuwabara, K., Kato, S., Matsumoto, M., Hirata, A., Akiyama, M., Tomita, M., Hirayama, A., Sato, A., Suzuki, C., Sugimoto, M., Soga, T., Sugiyama, D., Okamura, T. & Takebayashi, T., 2019 Jan 1, (Accepted/In press) In : Journal of Clinical Lipidology.

Research output: Contribution to journalArticle

Open Access
Branched Chain Amino Acids
Dyslipidemias
Diabetes Mellitus
Population
LDL Cholesterol

A study of fuel cell scheduling effect on local energy markets with heterogeneous renewable sources

Spasova, B., Kawamoto, D. & Takefuji, Y., 2019 Mar 5, In : Energies. 12, 5, 854.

Research output: Contribution to journalArticle

Open Access
Fuel Cell
Fuel cells
Scheduling
Energy
Battery
10 Citations (Scopus)

Autophagy regulates lipid metabolism through selective turnover of NCoR1

Saito, T., Kuma, A., Sugiura, Y., Ichimura, Y., Obata, M., Kitamura, H., Okuda, S., Lee, H. C., Ikeda, K., Kanegae, Y., Saito, I., Auwerx, J., Motohashi, H., Suematsu, M., Soga, T., Yokomizo, T., Waguri, S., Mizushima, N. & Komatsu, M., 2019 Dec 1, In : Nature communications. 10, 1, 1567.

Research output: Contribution to journalArticle

Open Access
Nuclear Receptor Co-Repressor 1
lipid metabolism
Peroxisome Proliferator-Activated Receptors
Autophagy
Lipid Metabolism

Axis elongation during Xenopus tail-bud stage is regulated by GABA expressed in the anterior-to-mid neural tube

Furukawa, T., Yamasaki, Y., Hara, Y., Otsuki, C., Maki, H., Soga, T., Moriyama, Y. & Kuroda, H., 2019 Jan 1, In : International Journal of Developmental Biology. 63, 1-2, p. 37-43 7 p.

Research output: Contribution to journalArticle

Neural Tube
Xenopus
gamma-Aminobutyric Acid
Tail
GABA Receptors
Open Access
Republic of Korea
Causality
Safety
City Planning
Multivariate Analysis

Chlorococcum turfosum comb. nov. (Volvocales, Chlorophyceae) and visualization of chimeric sequences

Nakada, T., Watanabe, S., Lewis, L. A. & Tomita, M., 2019 Jan 1, (Accepted/In press) In : Phycological Research.

Research output: Contribution to journalArticle

Chlorococcum
Comb and Wattles
Chlorophyceae
rRNA Genes
visualization

Classification of patients with cold sensation by a review of systems database: A single-centre observational study

Yoshino, T., Katayama, K., Yamaguchi, R., Imoto, S., Miyano, S., Mima, H. & Watanabe, K., 2019 Aug 1, In : Complementary Therapies in Medicine. 45, p. 7-13 7 p.

Research output: Contribution to journalArticle

Observational Studies
Kampo Medicine
Traditional Medicine
Databases
Qi

Comparative genomics of Bacteria commonly identified in the built environment

Merino, N., Zhang, S., Tomita, M. & Suzuki, H., 2019 Jan 28, In : BMC Genomics. 20, 1, 92.

Research output: Contribution to journalArticle

Genomics
Genome
Bacteria
Life Style
Genome Size

Comparison of Sexual Reproductive Behaviors in Two Species of Macrobiotidae (Tardigrada: Eutardigrada)

Sugiura, K., Minato, H., Suzuki, A. C., Arakawa, K., Kunieda, T. & Matsumoto, M., 2019 Jan 1, In : Zoological Science. 36, 2, p. 120-127 8 p.

Research output: Contribution to journalArticle

Tardigrada
sexual behavior
reproductive behavior
cloaca
ejaculation

Complete genome sequence of halomonas olivaria, a moderately halophilic bacterium isolated from olive processing effluents, obtained by nanopore sequencing

Nagata, S., Ii, K. M., Tsukimi, T., Miura, M. C., Galipon, J. & Arakawa, K., 2019 May 2, In : Microbiology Resource Announcements. 8, 18, e00144-19.

Research output: Contribution to journalArticle

Open Access
Halomonas
Nanopores
Olea
Genome
Bacteria
Open Access
Halomonas
Nanopores
Sulfides
Metals
Genome

Complete genome sequence of halophilic deep-sea bacterium halomonas axialensis strain Althf1

Tsurumaki, M., Deno, S., Galipon, J. & Arakawa, K., 2019 Aug 1, In : Microbiology Resource Announcements. 8, 31, e00839-19.

Research output: Contribution to journalArticle

Open Access
Halomonas
Hydrothermal Vents
Oceans and Seas
Nanopores
Genome
1 Citation (Scopus)

Complete genome sequence of Psychrobacter sp. Strain KH172YL61, isolated from deep-sea sediments in the Nankai Trough, Japan

Evans-Yamamoto, D., Takeuchi, N., Masuda, T., Murai, Y., Onuma, Y., Mori, H., Masuyama, N., Ishiguro, S., Yachie, N. & Arakawa, K., 2019 Apr 18, In : Microbiology Resource Announcements. 8, 16, e00326-19.

Research output: Contribution to journalArticle

Open Access
Psychrobacter
Genome Size
Base Composition
Gram-Negative Bacteria
Oceans and Seas
1 Citation (Scopus)

Cross-linguistically shared and language-specific sound symbolism in novel words elicited by locomotion videos in Japanese and English

Saji, N., Akita, K., Kantartzis, K., Kita, S. & Imai, M., 2019 Jan 1, In : PloS one. 14, 7, e0218707.

Research output: Contribution to journalArticle

Open Access
Locomotion
locomotion
Language
Acoustic waves
Data Mining
1 Citation (Scopus)

Cruisers: An automotive sensing platform for smart cities using door-to-door garbage collecting trucks

Chen, Y., Nakazawa, J., Yonezawa, T. & Tokuda, H., 2019 Mar 15, In : Ad Hoc Networks. 85, p. 32-45 14 p.

Research output: Contribution to journalArticle

Trucks
Garbage trucks
Cabs (truck)
Sensors
Servers
2 Citations (Scopus)

Developing a design-led approach for the food-energy-water nexus in cities

Yan, W. & Roggema, R., 2019 Jan 1, In : Urban Planning. 4, 1, p. 123-138 16 p.

Research output: Contribution to journalArticle

Open Access
food
energy
water
urban agriculture
vulnerability

Dr. Furukawa’s View in Using Abductive Logic Programming for Promoting Cognition

Suwa, M., 2019 Apr 1, In : New Generation Computing. 37, 2, p. 159-165 7 p.

Research output: Contribution to journalArticle

Logic programming
Cognition
Logic Programming
Cognitive Science
Wake

Dynamics and Perception in the Thermal Grill Illusion

Patwardhan, S., Kawazoe, A., Kerr, D., Nakatani, M. & Visell, Y., 2019 Jan 1, (Accepted/In press) In : IEEE Transactions on Haptics.

Research output: Contribution to journalArticle

Tissue
Physics
Feedback
Heating
Hot Temperature
2 Citations (Scopus)

Effects of inter-day and intra-day variation on salivary metabolomic profiles

Kawanishi, N., Hoshi, N., Masahiro, S., Enomoto, A., Ota, S., Kaneko, M., Soga, T., Tomita, M. & Kimoto, K., 2019 Feb 1, In : Clinica Chimica Acta. 489, p. 41-48 8 p.

Research output: Contribution to journalArticle

Metabolomics
Saliva
Mouth Diseases
Xerostomia
Capillary electrophoresis

Environmental Factors Affecting the Reproductive Rate of Urban Northern Goshawks

Natsukawa, H., Mori, K., Komuro, S., Shiokawa, T., Umetsu, J. & Ichinose, T., 2019 Nov 11, In : Journal of Raptor Research. 53, 4, p. 377-386 10 p.

Research output: Contribution to journalArticle

Open Access
Accipiter gentilis
nests
environmental factors
intraspecific competition
canopy
1 Citation (Scopus)

Fast and global detection of periodic sequence repeats in large genomic resources

Mori, H., Evans-Yamamoto, D., Ishiguro, S., Tomita, M. & Yachie, N., 2019 Jan 25, In : Nucleic Acids Research. 47, 2, p. e8

Research output: Contribution to journalArticle

Software
DNA
Periodicity
Proteins
Clustered Regularly Interspaced Short Palindromic Repeats
1 Citation (Scopus)

Fructose increases the activity of sodium hydrogen exchanger in renal proximal tubules that is dependent on ketohexokinase

Hayasaki, T., Ishimoto, T., Doke, T., Hirayama, A., Soga, T., Furuhashi, K., Kato, N., Kosugi, T., Tsuboi, N., Lanaspa, M. A., Johnson, R. J., Maruyama, S. & Kadomatsu, K., 2019 Sep 1, In : Journal of Nutritional Biochemistry. 71, p. 54-62 9 p.

Research output: Contribution to journalArticle

ketohexokinase
Proximal Kidney Tubule
Sodium-Hydrogen Antiporter
Fructose
Blood pressure

Genomic analysis of Pseudomonas sp. Strain SCT, an iodate-reducing bacterium isolated from marine sediment, reveals a possible use for bioremediation

Harada, M., Ito, K., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H. & Amachi, S., 2019 May 1, In : G3: Genes, Genomes, Genetics. 9, 5, p. 1321-1329 9 p.

Research output: Contribution to journalArticle

Open Access
Iodates
Geologic Sediments
Environmental Biodegradation
Pseudomonas stutzeri
Pseudomonas

Geo CPS: Spatial challenges and opportunities for CPS in the geographic dimension

Yan, W. & Sakairi, T., 2019 Jan 1, (Accepted/In press) In : Journal of Urban Management.

Research output: Contribution to journalArticle

Open Access
GIS
spatial data
Geographical Information System
Internet
information service

GLUT6 is a lysosomal transporter that is regulated by inflammatory stimuli and modulates glycolysis in macrophages

Maedera, S., Mizuno, T., Ishiguro, H., Ito, T., Soga, T. & Kusuhara, H., 2019 Jan 1, In : FEBS Letters. 593, 2, p. 195-208 14 p.

Research output: Contribution to journalArticle

Macrophages
Glycolysis
Transcription Factor RelA
Membranes
Metabolomics

GNU radio-based cloud development environment for software-defined radio users

Suzuki, H., Ichikawa, H., Mitsugi, J. & Kawakita, Y., 2019 Jan 1, In : Journal of information processing. 27, p. 287-296 10 p.

Research output: Contribution to journalArticle

Open Access
Response time (computer systems)
Distributed computer systems
Parallel processing systems
Cognitive radio
Personal computers
5 Citations (Scopus)

Gut microbiome-derived phenyl sulfate contributes to albuminuria in diabetic kidney disease

Kikuchi, K., Saigusa, D., Kanemitsu, Y., Matsumoto, Y., Thanai, P., Suzuki, N., Mise, K., Yamaguchi, H., Nakamura, T., Asaji, K., Mukawa, C., Tsukamoto, H., Sato, T., Oikawa, Y., Iwasaki, T., Oe, Y., Tsukimi, T., Fukuda, N. N., Ho, H. J., Nanto-Hara, F. & 36 others, Ogura, J., Saito, R., Nagao, S., Ohsaki, Y., Shimada, S., Suzuki, T., Toyohara, T., Mishima, E., Shima, H., Akiyama, Y., Akiyama, Y., Ichijo, M., Matsuhashi, T., Matsuo, A., Ogata, Y., Yang, C. C., Suzuki, C., Breeggemann, M. C., Heymann, J., Shimizu, M., Ogawa, S., Takahashi, N., Suzuki, T., Owada, Y., Kure, S., Mano, N., Soga, T., Wada, T., Kopp, J. B., Fukuda, S., Hozawa, A., Yamamoto, M., Ito, S., Wada, J., Tomioka, Y. & Abe, T., 2019 Dec 1, In : Nature communications. 10, 1, 1835.

Research output: Contribution to journalArticle

Open Access
kidney diseases
Albuminuria
Diabetic Nephropathies
Sulfates
sulfates
Cognition
Person
Methodology
Communication
Thing
Volvocaceae
Chlamydomonas
Chlorophyceae
Phylogeny
phylogeny

Inosine pranobex enhances human NK cell cytotoxicity by inducing metabolic activation and NKG2D ligand expression

McCarthy, M. T., Lin, D., Soga, T., Adam, J. & O'Callaghan, C. A., 2019 Jan 1, (Accepted/In press) In : European Journal of Immunology.

Research output: Contribution to journalArticle

Open Access
Inosine Pranobex
Natural Killer Cells
Ligands
NK Cell Lectin-Like Receptor Subfamily K
Subacute Sclerosing Panencephalitis
Open Access
inner core
tropical cyclone
aerosol
lightning
raindrop

Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life

Saito, M., Sato, A., Nagata, S., Tamaki, S., Tomita, M., Suzuki, H. & Kanai, A., 2019 Sep 25, In : Genome biology and evolution. 11, 10, p. 2713-2726 14 p.

Research output: Contribution to journalArticle

Open Access
Polynucleotide 5'-Hydroxyl-Kinase
polynucleotides
phosphotransferases (kinases)
protein
Eukaryota

Manufacturing of biomimetic silicone rubber films for experimental fluid mechanics: 3D printed shark skin molds

Yasuda, Y., Zhang, K., Sasaki, O., Tomita, M., Rival, D. & Galipon, J., 2019 Jan 1, In : Journal of the Electrochemical Society. 166, 9, p. B3302-B3308

Research output: Contribution to journalArticle

Open Access
Rubber films
Silicone Elastomers
Fluid mechanics
Molds
Biomimetics

Mass Spectrometry-Compatible Subcellular Fractionation for Proteomics

Masuda, T., Sugiyama, N., Tomita, M., Ohtsuki, S. & Ishihama, Y., 2019 Jan 1, (Accepted/In press) In : Journal of Proteome Research.

Research output: Contribution to journalArticle

Fractionation
Proteomics
Mass spectrometry
Mass Spectrometry
Phosphorylation

Measuring Spatial Accessibility to Pick-Up Service Considering Differentiated Supply and Demand: A Case in Hangzhou, China

Lin, L., Han, H., Yan, W., Nakayama, S. & Shu, X., 2019 Jan 1, In : Sustainability (Switzerland). 11, 12, 3448.

Research output: Contribution to journalArticle

Open Access
accessibility
supply
China
demand
customer

Metabolic adaptation to glycolysis is a basic defense mechanism of macrophages for Mycobacterium tuberculosis infection

Osada-Oka, M., Goda, N., Saiga, H., Yamamoto, M., Takeda, K., Ozeki, Y., Yamaguchi, T., Soga, T., Tateishi, Y., Miura, K., Okuzaki, D., Kobayashi, K. & Matsumoto, S., 2019 Nov 8, In : International immunology. 31, 12, p. 781-793 13 p.

Research output: Contribution to journalArticle

Open Access
Hypoxia-Inducible Factor 1
Mycobacterium Infections
Glycolysis
Mycobacterium tuberculosis
Macrophages

Metabolome Analysis Reveals Dermal Histamine Accumulation in Murine Dermatitis Provoked by Genetic Deletion of P-Glycoprotein and Breast Cancer Resistance Protein

Hashimoto, N., Nakamichi, N., Nanmo, H., Kimura, K. I., Masuo, Y., Sakai, Y., Schinkel, A. H., Sato, S., Soga, T. & Kato, Y., 2019 Nov 1, In : Pharmaceutical research. 36, 11, 158.

Research output: Contribution to journalArticle

Dermatitis
Metabolome
P-Glycoprotein
Histamine
Skin

Metabolome profiling of various seaweed species discriminates between brown, red, and green algae

Hamid, S. S., Wakayama, M., Ichihara, K., Sakurai, K., Ashino, Y., Kadowaki, R., Soga, T. & Tomita, M., 2019 Jan 1, In : Planta.

Research output: Contribution to journalArticle

Phaeophyta
Rhodophyta
Seaweed
metabolome
Chlorophyta

Metabolomic profiling reveals salivary hypotaurine as a potential early detection marker for medication-related osteonecrosis of the jaw

Yatsuoka, W., Ueno, T., Miyano, K., Uezono, Y., Enomoto, A., Kaneko, M., Ota, S., Soga, T., Sugimoto, M. & Ushijima, T., 2019 Jan 1, In : PloS one. 14, 8, e0220712.

Research output: Contribution to journalArticle

Open Access
Metabolomics
Osteonecrosis
metabolomics
Jaw
jaws
3 Citations (Scopus)

Metabolomics Platform with Capillary Electrophoresis Coupled with High-Resolution Mass Spectrometry for Plasma Analysis

Sasaki, K., Sagawa, H., Suzuki, M., Yamamoto, H., Tomita, M., Soga, T. & Ohashi, Y., 2019 Jan 15, In : Analytical Chemistry. 91, 2, p. 1295-1301 7 p.

Research output: Contribution to journalArticle

Capillary electrophoresis
Metabolites
Mass spectrometry
Plasmas
Plasma (human)
1 Citation (Scopus)

Methodological and Philosophical Issues in Studies on Embodied Knowledge

Suwa, M., 2019 Apr 1, In : New Generation Computing. 37, 2, p. 167-184 18 p.

Research output: Contribution to journalArticle

Embodiment
Metacognition
Universality
Multiplicity
Person
2 Citations (Scopus)

MITF controls the TCA cycle to modulate the melanoma hypoxia response

Louphrasitthiphol, P., Ledaki, I., Chauhan, J., Falletta, P., Siddaway, R., Buffa, F. M., Mole, D. R., Soga, T. & Goding, C. R., 2019 Jan 1, In : Pigment Cell and Melanoma Research.

Research output: Contribution to journalArticle

Open Access
Microphthalmia-Associated Transcription Factor
Melanoma
Metabolism
Transcription Factors
Genes
1 Citation (Scopus)

Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue

Kono, N., Nakamura, H., Ohtoshi, R., Moran, D. A. P., Shinohara, A., Yoshida, Y., Fujiwara, M., Mori, M., Tomita, M. & Arakawa, K., 2019 Dec 1, In : Scientific reports. 9, 1, 8380.

Research output: Contribution to journalArticle

Open Access
Spiders
Silk
Genome
Genes
Proteome

Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii

Craig, R. J., Böndel, K. B., Arakawa, K., Nakada, T., Ito, T., Bell, G., Colegrave, N., Keightley, P. D. & Ness, R. W., 2019 Sep 1, In : Molecular ecology. 28, 17, p. 3977-3993 17 p.

Research output: Contribution to journalArticle

Chlamydomonas reinhardtii
Chlorophyta
eukaryote
Eukaryota
green alga

Peptide Synthesis under the Alkaline Hydrothermal Conditions on Enceladus

Takahagi, W., Seo, K., Shibuya, T., Takano, Y., Fujishima, K., Saitoh, M., Shimamura, S., Matsui, Y., Tomita, M. & Takai, K., 2019 Jan 1, (Accepted/In press) In : ACS Earth and Space Chemistry.

Research output: Contribution to journalArticle

Enceladus
peptide
peptides
Rocks
Amino Acids

Perioperative serum and urine metabolome analyses in patients with hepatocellular carcinoma undergoing partial hepatectomy

Kajiura, D., Yamanaka-Okumura, H., Hirayama, A., Tatano, H., Endo, K., Honma, M., Igarashi, K., Shoji, F., Ikeda, S., Yamaguchi, N., Katayama, T., Morine, Y., Imura, S., Utsunomiya, T., Soga, T., Tomita, M. & Shimada, M., 2019 Feb 1, In : Nutrition. 58, p. 110-119 10 p.

Research output: Contribution to journalArticle

Metabolome
Hepatectomy
Hepatocellular Carcinoma
Urine
Serum