Faculty of Environment and Information Studies

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2020

Adenosine leakage from perforin-burst extracellular vesicles inhibits perforin secretion by cytotoxic T-lymphocytes

Tadokoro, H., Hirayama, A., Kudo, R., Hasebe, M., Yoshioka, Y., Matsuzaki, J., Yamamoto, Y., Sugimoto, M., Soga, T. & Ochiya, T., 2020 Apr, In : PloS one. 15, 4, e0231430.

Research output: Contribution to journalArticle

Open Access

A FLCN-TFE3 Feedback Loop Prevents Excessive Glycogenesis and Phagocyte Activation by Regulating Lysosome Activity

Endoh, M., Baba, M., Endoh, T., Hirayama, A., Nakamura-Ishizu, A., Umemoto, T., Hashimoto, M., Nagashima, K., Soga, T., Lang, M., Schmidt, L. S., Linehan, W. M. & Suda, T., 2020 Feb 11, In : Cell Reports. 30, 6, p. 1823-1834.e5

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Analysis of carbon dioxide concentration prediction model and diffusion tendency of expiratory by simultaneous multipoint sensing

Moritani, M., Watanabe, N., Miyamoto, K., Itoda, K., Imani, J., Aoyama, H. & Takefuji, Y., 2020 Jul 1, In : Applied Sciences (Switzerland). 10, 13, 4631.

Research output: Contribution to journalArticle

Open Access
Open Access

Approach-oriented coping strategy level may be related to volume of the whole hippocampus in the elderly

Kida, H., Nakajima, S., Shikimoto, R., Ochi, R., Noda, Y., Tsugawa, S., Fujii, S., Takayama, M., Mimura, M. & Niimura, H., 2020 Apr 1, In : Psychiatry and Clinical Neurosciences. 74, 4, p. 270-276 7 p.

Research output: Contribution to journalArticle

Base editors for simultaneous introduction of C-to-T and A-to-G mutations

Sakata, R. C., Ishiguro, S., Mori, H., Tanaka, M., Tatsuno, K., Ueda, H., Yamamoto, S., Seki, M., Masuyama, N., Nishida, K., Nishimasu, H., Arakawa, K., Kondo, A., Nureki, O., Tomita, M., Aburatani, H. & Yachie, N., 2020, (Accepted/In press) In : Nature Biotechnology.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens

Vu, T. D., Iwasaki, Y., Shigenobu, S., Maruko, A., Oshima, K., Iioka, E., Huang, C. L., Abe, T., Tamaki, S., Lin, Y. W., Chen, C. K., Lu, M. Y., Hojo, M., Wang, H. V., Tzeng, S. F., Huang, H. J., Kanai, A., Gojobori, T., Chiang, T. Y., Sun, H. S. & 2 others, Li, W. H. & Okada, N., 2020 Jun 1, In : PLoS Genetics. 16, 6, p. e1008831

Research output: Contribution to journalArticle

Open Access

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Katayama, T., Vos, R. A., Mishima, H., Kawano, S., Kawashima, S., Kim, J. D., Moriya, Y., Tokimatsu, T., Yamaguchi, A., Yamamoto, Y., Wu, H., Amstutz, P., Antezana, E., Aoki, N. P., Arakawa, K., Bolleman, J. T., Bolton, E., Bonnal, R. J. P., Bono, H., Burger, K. & 57 others, Chiba, H., Cohen, K. B., Deutsch, E. W., Fernández-Breis, J. T., Fu, G., Fujisawa, T., Fukushima, A., García, A., Goto, N., Groza, T., Hercus, C., Hoehndorf, R., Itaya, K., Juty, N., Kawashima, T., Kim, J. H., Kinjo, A. R., Kotera, M., Kozaki, K., Kumagai, S., Kushida, T., Lütteke, T., Matsubara, M., Miyamoto, J., Mohsen, A., Mori, H., Naito, Y., Nakazato, T., Nguyen-Xuan, J., Nishida, K., Nishida, N., Nishide, H., Ogishima, S., Ohta, T., Okuda, S., Paten, B., Perret, J. L., Prathipati, P., Prins, P., Queralt-Rosinach, N., Shinmachi, D., Suzuki, S., Tabata, T., Takatsuki, T., Taylor, K., Thompson, M., Uchiyama, I., Vieira, B., Wei, C. H., Wilkinson, M., Yamada, I., Yamanaka, R., Yoshitake, K., Yoshizawa, A. C., Dumontier, M., Kosaki, K. & Takagi, T., 2020, In : F1000Research. 9, 136.

Research output: Contribution to journalArticle

Open Access

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

MetaSUB Consortium, 2020, (Accepted/In press) In : Nature medicine.

Research output: Contribution to journalArticle

Open Access

Chromatin Remodeling and Immediate Early Gene Activation by SLFN11 in Response to Replication Stress

Murai, J., Zhang, H., Pongor, L., Tang, S. W., Jo, U., Moribe, F., Ma, Y., Tomita, M. & Pommier, Y., 2020 Mar 24, In : Cell Reports. 30, 12, p. 4137-4151.e6

Research output: Contribution to journalArticle

Open Access

Clozing the gap: How far do cloze items measure?

Trace, J., 2020 Apr 1, In : Language Testing. 37, 2, p. 235-253 19 p.

Research output: Contribution to journalArticle

Complete genome sequence of Bacillus sp. Strain KH172Yl63, isolated from deep-sea sediment

Murai, Y., Masuda, T., Onuma, Y., Evans-Yamamoto, D., Takeuchi, N., Mori, H., Masuyama, N., Ishiguro, S., Yachie, N. & Arakawa, K., 2020 Apr 16, In : Microbiology Resource Announcements. 9, 16, e00291.

Research output: Contribution to journalArticle

Open Access

Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

Inoue, H., Shibata, S., Ii, K., Inoue, J., Fukuda, S. & Arakawa, K., 2020 May 28, In : Microbiology Resource Announcements. 9, 22, e00319-20.

Research output: Contribution to journalArticle

Open Access

Complete genome sequence of halomonas hydrothermalis strain slthf2, a halophilic bacterium isolated from a deep-sea hydrothermal-vent environment

Takeyama, N., Huang, M., Sato, K., Galipon, J. & Arakawa, K., 2020 Apr 9, In : Microbiology Resource Announcements. 9, 15, e00294-20.

Research output: Contribution to journalArticle

Open Access

Complete genome sequence of halomonas meridiana strain eplume2, isolated from a hydrothermal plume in the northeast pacific ocean

Kurihara, Y., Kawai, S., Sakai, A., Galipon, J. & Arakawa, K., 2020 May 14, In : Microbiology Resource Announcements. 9, 20, e00330-20.

Research output: Contribution to journalArticle

Open Access

Complete genome sequence of halomonas meridiana strain Slthf1, isolated from a deep-sea thermal vent

Takahashi, Y., Takahashi, H., Galipon, J. & Arakawa, K., 2020 Apr 16, In : Microbiology Resource Announcements. 9, 16, e00292.

Research output: Contribution to journalArticle

Open Access

Complete Genome Sequences of Two Cutibacterium acnes Strains Isolated from an Orthopedic Surgical Site

Seo, K., Tanaka, K., Fukuda, S. & Arakawa, K., 2020 Apr 23, In : Microbiology Resource Announcements. 9, 17, e00290-20.

Research output: Contribution to journalArticle

Open Access
Open Access

Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis

Hikichi, S., Sugimoto, M. & Tomita, M., 2020 Dec 1, In : Scientific reports. 10, 1, 7923.

Research output: Contribution to journalArticle

Open Access

Decision-Making While Passing and Visual Search Strategy During Ball Receiving in Team Sport Play

Natsuhara, T., Kato, T., Nakayama, M., Yoshida, T., Sasaki, R., Matsutake, T. & Asai, T., 2020 Apr 1, In : Perceptual and Motor Skills. 127, 2, p. 468-489 22 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes

Tokuda, M., Suzuki, H., Yanagiya, K., Yuki, M., Inoue, K., Ohkuma, M., Kimbara, K. & Shintani, M., 2020 Jun 9, In : Frontiers in Microbiology. 11, 1187.

Research output: Contribution to journalArticle

Open Access

Distribution of Macrobiotus shonaicus Stec, Arakawa & Michalczyk, 2018 (Tardigrada: Eutardigrada: Macrobiotidae) in Japan

Sugiura, K., Arakawa, K. & Matsumoto, M., 2020 Apr 23, In : Zootaxa. 4767, 1, p. 56-70 15 p.

Research output: Contribution to journalArticle

Draft Genome Sequence of Geobacter sp. Strain SVR, Isolated from Antimony Mine Soil

Warashina, T., Harada, M., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H. & Amachi, S., 2020 Jun 25, In : Microbiology Resource Announcements. 9, 26, e00461-20.

Research output: Contribution to journalArticle

Open Access

Dynamic 13C Flux Analysis Captures the Reorganization of Adipocyte Glucose Metabolism in Response to Insulin

Quek, L. E., Krycer, J. R., Ohno, S., Yugi, K., Fazakerley, D. J., Scalzo, R., Elkington, S. D., Dai, Z., Hirayama, A., Ikeda, S., Shoji, F., Suzuki, K., Locasale, J. W., Soga, T., James, D. E. & Kuroda, S., 2020 Feb 21, In : iScience. 23, 2, 100855.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Effect of blanching on the concentration of metabolites in two parts of Undaria pinnatifida, Wakame (leaf) and Mekabu (sporophyll)

Hamid, S. S., Wakayama, M., Ashino, Y., Kadowaki, R., Soga, T. & Tomita, M., 2020 May, In : Algal Research. 47, 101829.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Effects of feed crops and boiling on chicken egg yolk and white determined by a metabolome analysis

Ogura, T., Wakayama, M., Ashino, Y., Kadowaki, R., Sato, M., Soga, T. & Tomita, M., 2020 Oct 15, In : Food Chemistry. 327, 127077.

Research output: Contribution to journalArticle

Illogical dam policy in Japan

Takefuji, Y., 2020, (Accepted/In press) In : Natural Hazards.

Research output: Contribution to journalArticle

Impacts of number of cloud condensation nuclei on two-dimensional moist rayleigh convection

Miyamoto, Y., Nishizawa, S. & Tomita, H., 2020, In : Journal of the Meteorological Society of Japan. 98, 2, p. 437-453 17 p.

Research output: Contribution to journalArticle

Open Access

Inosine pranobex enhances human NK cell cytotoxicity by inducing metabolic activation and NKG2D ligand expression

McCarthy, M. T., Lin, D., Soga, T., Adam, J. & O'Callaghan, C. A., 2020 Jan 1, In : European Journal of Immunology. 50, 1, p. 130-137 8 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Integrated omics profiling of dextran sodium sulfate-induced colitic mice supplemented with Wolfberry (Lycium barbarum)

Aw, W., Jia, H., Lyu, W., Fukuda, S., Tomita, M., Otani, L. & Kato, H., 2020 Dec 1, In : npj Science of Food. 4, 1, 5.

Research output: Contribution to journalArticle

Open Access

Lactate production is a prioritized feature of adipocyte metabolism

Krycer, J. R., Quek, L. E., Francis, D., Fazakerley, D. J., Elkington, S. D., Diaz-Vegas, A., Cooke, K. C., Weiss, F. C., Duan, X., Kurdyukov, S., Zhou, P. X., Tambar, U. K., Hirayama, A., Ikeda, S., Kamei, Y., Soga, T., Cooney, G. J. & James, D. E., 2020 Jan 3, In : Journal of Biological Chemistry. 295, 1, p. 83-98 16 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Levels of glutamatergic neurometabolites in patients with severe treatment-resistant schizophrenia: a proton magnetic resonance spectroscopy study

Tarumi, R., Tsugawa, S., Noda, Y., Plitman, E., Honda, S., Matsushita, K., Chavez, S., Sawada, K., Wada, M., Matsui, M., Fujii, S., Miyazaki, T., Chakravarty, M. M., Uchida, H., Remington, G., Graff-Guerrero, A., Mimura, M. & Nakajima, S., 2020 Mar 1, In : Neuropsychopharmacology. 45, 4, p. 632-640 9 p.

Research output: Contribution to journalArticle

Marine tardigrades from Lützow-Holm Bay, East Antarctica with the description of a new species

Fujimoto, S., Suzuki, A. C., Ito, M., Tamura, T. & Tsujimoto, M., 2020 Jun 1, In : Polar Biology. 43, 6, p. 679-693 15 p.

Research output: Contribution to journalArticle

Mind the gap: personal carbon trading for road transport in Kenya

Al-Guthmy, F. M. O. & Yan, W., 2020, (Accepted/In press) In : Climate Policy.

Research output: Contribution to journalArticle

Modeling of measurement-based quantum network coding on a superconducting quantum processor

Pathumsoot, P., Matsuo, T., Satoh, T., Hajdušek, M., Suwanna, S. & Van Meter, R., 2020 May, In : Physical Review A. 101, 5, 052301.

Research output: Contribution to journalArticle

Molecular identity of the Antarctic heteronemertean Parborlasia corrugata (Nemertea: Pilidiophora) from Lützow-Holm Bay

Hookabe, N., Watanabe, K., Tsujimoto, M. & Kajihara, H., 2020, (Accepted/In press) In : Polar Science. 100535.

Research output: Contribution to journalArticle

Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells

Seong, K. H., Ly, N. H., Katou, Y., Yokota, N., Nakato, R., Murakami, S., Hirayama, A., Fukuda, S., Kang, S., Soga, T., Shirahige, K. & Ishii, S., 2020 Dec 1, In : Communications biology. 3, 1, 208.

Research output: Contribution to journalArticle

Open Access

Proximal Binaural Sound Can Induce Subjective Frisson

Honda, S., Ishikawa, Y., Konno, R., Imai, E., Nomiyama, N., Sakurada, K., Koumura, T., Kondo, H. M., Furukawa, S., Fujii, S. & Nakatani, M., 2020 Mar 3, In : Frontiers in Psychology. 11, 316.

Research output: Contribution to journalArticle

Open Access

Relationship of living arrangement with the decline in functional capacity in elderly people by gender: A longitudinal observational study

Imamura, H., Uchiyama, E., Akiyama, M., Kaneko, I., Takebayashi, T. & Nishiwaki, Y., 2020 May 20, In : Environmental Health and Preventive Medicine. 25, 1, 15.

Research output: Contribution to journalArticle

Open Access
Open Access
1 Citation (Scopus)

Scalable distributed metadata server based on nonblocking transactions

Hiraga, K., Tatebe, O. & Kawashima, H., 2020 Jan 1, In : Journal of Universal Computer Science. 26, 1, p. 89-106 18 p.

Research output: Contribution to journalArticle

Security Protection Mechanisms Must Be Embedded in Blockchain Applications

Takefuji, Y., 2020 Jul 14, In : Journal of Chemical Education. 97, 7, p. 1819-1820 2 p.

Research output: Contribution to journalArticle

Sensory properties and metabolomic profiles of dry-cured ham during the ripening process

Sugimoto, M., Sugawara, T., Obiya, S., Enomoto, A., Kaneko, M., Ota, S., Soga, T. & Tomita, M., 2020 Mar, In : Food Research International. 129, 108850.

Research output: Contribution to journalArticle

1 Citation (Scopus)
Open Access
1 Citation (Scopus)

Stable mutants of restriction-deficient/modification-proficient Bacillus subtilis 168: Hub strains for giant DNA engineering

Itaya, M., Sato, M., Watanabe, S., Yoshikawa, H., Tomita, M. & Sato, R., 2020 Jan 1, In : Journal of Deaf Studies and Deaf Education. 25, 1, p. 231-236 6 p.

Research output: Contribution to journalArticle

Thalamic and striato-pallidal volumes in schizophrenia patients and individuals at risk for psychosis: A multi-atlas segmentation study

Takahashi, T., Tsugawa, S., Nakajima, S., Plitman, E., Chakravarty, M. M., Masuda, F., Wada, M., Kurose, S., Ochi, R., Matsushita, K., Sasabayashi, D., Nakamura, M., Nishikawa, Y., Takayanagi, Y., Nishiyama, S., Higuchi, Y., Mizukami, Y., Furuichi, A., Kido, M., Hashimoto, R. & 5 others, Noguchi, K., Fujii, S., Mimura, M., Noda, Y. & Suzuki, M., 2020, (Accepted/In press) In : Schizophrenia Research.

Research output: Contribution to journalArticle

The unique antimicrobial recognition and signaling pathways in tardigrades with a comparison across ecdysozoa

Mapalo, M. A., Arakawa, K., Baker, C. M., Persson, D. K., Mirano-Bascos, D. & Giribet, G., 2020 Mar 1, In : G3: Genes, Genomes, Genetics. 10, 3, p. 1137-1148 12 p.

Research output: Contribution to journalArticle

Open Access