Research Output per year
Research Output
2020
A "philosophical molecule," hydrogen may overcome senescence and intractable diseases
Hirano, S. I., Ichikawa, Y., Kurokawa, R., Takefuji, Y. & Satoh, F., 2020 Jan 1, In : Medical gas research. 10, 1, p. 47-49 3 p.Research output: Contribution to journal › Review article
2019
Nanopore sequencing: Review of potential applications in functional genomics
Kono, N. & Arakawa, K., 2019 Jan 1, In : Development Growth and Differentiation.Research output: Contribution to journal › Review article
13
Citations
(Scopus)
On the correlation between total condensate and moist heating in tropical cyclones and applications for diagnosing intensity
Nolan, D. S., Miyamoto, Y., Wu, S. N. & Soden, B. J., 2019 Jan 1, In : Monthly Weather Review. 147, 10, p. 3759-3784 26 p.Research output: Contribution to journal › Review article
Preventing explosions of hydrogen gas inhalers
Kurokawa, R., Hirano, S. I., Ichikawa, Y., Matsuo, G. & Takefuji, Y., 2019 Sep, In : Medical gas research. 9, 3, p. 160-162 3 p.Research output: Contribution to journal › Review article
Reconsidering plasmid maintenance factors for computational plasmid design
Yano, H., Shintani, M., Tomita, M., Suzuki, H. & Oshima, T., 2019 Jan 1, In : Computational and Structural Biotechnology Journal. 17, p. 70-81 12 p.Research output: Contribution to journal › Review article
4
Citations
(Scopus)
2016
A systematic review of the economic evaluation of telemedicine in Japan
Akiyama, M. & Yoo, B. K., 2016 Jul, In : Journal of Preventive Medicine and Public Health. 49, 4, p. 183-196 14 p.Research output: Contribution to journal › Review article
13
Citations
(Scopus)
2015
Disrupted tRNA genes and tRNA fragments: A perspective on tRNA gene evolution
Kanai, A., 2015 Jan 26, In : Life. 5, 1, p. 321-331 11 p.Research output: Contribution to journal › Review article
19
Citations
(Scopus)
2014
BioHackathon series in 2011 and 2012: Penetration of ontology and linked data in life science domains
Katayama, T., Wilkinson, M. D., Aoki-Kinoshita, K. F., Kawashima, S., Yamamoto, Y., Yamaguchi, A., Okamoto, S., Kawano, S., Kim, J. D., Wang, Y., Wu, H., Kano, Y., Ono, H., Bono, H., Kocbek, S., Aerts, J., Akune, Y., Antezana, E., Arakawa, K., Aranda, B. & 65 others, , 2014, In : Journal of Biomedical Semantics. 5, 1, 5.Research output: Contribution to journal › Review article
23
Citations
(Scopus)
Concise review: Genetic dissection of hypoxia signaling pathways in normal and leukemic stem cells
Gezer, D., Vukovic, M., Soga, T., Pollard, P. J. & Kranc, K. R., 2014 Jun, In : Stem Cells. 32, 6, p. 1390-1397 8 p.Research output: Contribution to journal › Review article
20
Citations
(Scopus)
Mechanotransduction in epidermal Merkel cells
Nakatani, M., Maksimovic, S., Baba, Y. & Lumpkin, E. A., 2014, In : Pflugers Archiv European Journal of Physiology. 467, 1, p. 101-108 8 p.Research output: Contribution to journal › Review article
20
Citations
(Scopus)
Metabolome analysis based on capillary electrophoresis-mass spectrometry
Hirayama, A., Wakayama, M. & Soga, T., 2014 Oct 1, In : TrAC - Trends in Analytical Chemistry. 61, p. 215-222 8 p.Research output: Contribution to journal › Review article
60
Citations
(Scopus)
Pattern classification in Kampo medicine
Yakubo, S., Ito, M., Ueda, Y., Okamoto, H., Kimura, Y., Amano, Y., Togo, T., Adachi, H., Mitsuma, T. & Watanabe, K., 2014, In : Evidence-based Complementary and Alternative Medicine. 2014, 535146.Research output: Contribution to journal › Review article
29
Citations
(Scopus)
Radiation-driven migration: The case of Minamisoma City, Fukushima, Japan, after the Fukushima nuclear accident
Zhang, H., Yan, W., Oba, A. & Zhang, W., 2014 Sep 9, In : International journal of environmental research and public health. 11, 9, p. 9286-9305 20 p.Research output: Contribution to journal › Review article
24
Citations
(Scopus)
Rare insights into cancer biology
Adam, J., Yang, M., Soga, T. & Pollard, P. J., 2014 May 15, In : Oncogene. 33, 20, p. 2547-2556 10 p.Research output: Contribution to journal › Review article
54
Citations
(Scopus)
tRNA gene diversity in the three domains of life
Fujishima, K. & Kanai, A., 2014 Jan 1, In : Frontiers in Genetics. 5, MAY, 142.Research output: Contribution to journal › Review article
35
Citations
(Scopus)
Unexpected tRNAs that do not consistently obey the universal genetic code
Hamashima, K. & Kanai, A., 2014 Jan 1, In : Seikagaku. 86, 4, p. 483-488 6 p.Research output: Contribution to journal › Review article
2013
A blueprint for building a quantum computer
Van Meter, R. & Horsman, C., 2013 Oct 22, In : Communications of the ACM. 56, 10, p. 84-93 10 p.Research output: Contribution to journal › Review article
42
Citations
(Scopus)
Alternative genetic code for amino acids and transfer RNA revisited
Hamashima, K. & Kanai, A., 2013 Jun 1, In : Biomolecular Concepts. 4, 3, p. 309-318 10 p.Research output: Contribution to journal › Review article
7
Citations
(Scopus)
Cancer metabolism: Key players in metabolic reprogramming
Soga, T., 2013 Mar 1, In : Cancer science. 104, 3, p. 275-281 7 p.Research output: Contribution to journal › Review article
141
Citations
(Scopus)
Oncometabolites: Linking altered metabolism with cancer
Yang, M., Soga, T. & Pollard, P. J., 2013 Sep 3, In : Journal of Clinical Investigation. 123, 9, p. 3652-3658 7 p.Research output: Contribution to journal › Review article
175
Citations
(Scopus)
2012
Knowledge, beliefs, and concerns about opioids, palliative care, and homecare of advanced cancer patients: A nationwide survey in Japan
Akiyama, M., Takebayashi, T., Morita, T., Miyashita, M., Hirai, K., Matoba, M., Akizuki, N., Shirahige, Y., Yamagishi, A. & Eguchi, K., 2012 May 1, In : Supportive Care in Cancer. 20, 5, p. 923-931 9 p.Research output: Contribution to journal › Review article
14
Citations
(Scopus)
Measures of Compositional Strand Bias Related to Replication Machinery and its Applications
Arakawa, K. & Tomita, M., 2012 Mar 1, In : Current Genomics. 13, 1, p. 4-15 12 p.Research output: Contribution to journal › Review article
9
Citations
(Scopus)
The rice proteogenomics database OryzaPG-DB: Development, expansion, and new features
Helmy, M., Sugiyama, N., Tomita, M. & Ishihama, Y., 2012 Apr 2, In : Frontiers in Plant Science. 3, APR, 65.Research output: Contribution to journal › Review article
10
Citations
(Scopus)
Usage and attitudes of physicians in Japan concerning traditional Japanese medicine (Kampo Medicine): A descriptive evaluation of a representative questionnaire-based survey
Moschik, E. C., Mercado, C., Yoshino, T., Matsuura, K. & Watanabe, K., 2012 Mar 19, In : Evidence-based Complementary and Alternative Medicine. 2012, 139818.Research output: Contribution to journal › Review article
24
Citations
(Scopus)
2011
[Virus, phage, transposon and their regulatory small non-coding RNAs].
Kanai, A., 2011 Jun, In : Uirusu. 61, 1, p. 25-34 10 p.Research output: Contribution to journal › Review article
Open Access
1
Citation
(Scopus)
Redox regulation in respiring Saccharomyces cerevisiae
Murray, D. B., Haynes, K. & Tomita, M., 2011 Oct 1, In : Biochimica et Biophysica Acta - General Subjects. 1810, 10, p. 945-958 14 p.Research output: Contribution to journal › Review article
40
Citations
(Scopus)
Systems biology reveals microRNA-mediated gene regulation
Watanabe, Y. & Kanai, A., 2011 Dec 1, In : Frontiers in Genetics. 2, JUNE, Article 29.Research output: Contribution to journal › Review article
21
Citations
(Scopus)
Traditional Japanese Kampo medicine: Clinical research between modernity and traditional medicine - The state of research and methodological suggestions for the future
Witt, C. M., Watanabe, K., Matsuura, K., Gao, P., Hottenbacher, L., Tokunaga, H., Nishimura, K., Imazu, Y. & Reissenweber, H., 2011 Apr 6, In : Evidence-based Complementary and Alternative Medicine. 2011, 513842.Research output: Contribution to journal › Review article
69
Citations
(Scopus)
Transcriptional regulation of organic anion transporting polypeptide SLCO4C1 as a new therapeutic modality to prevent chronic kidney disease
Suzuki, T., Toyohara, T., Akiyama, Y., Takeuchi, Y., Mishima, E., Suzuki, C., Ito, S., Soga, T. & Abe, T., 2011 Sep, In : Journal of Pharmaceutical Sciences. 100, 9, p. 3696-3707 12 p.Research output: Contribution to journal › Review article
21
Citations
(Scopus)
Vertebrate virus-encoded microRNAs and their sequence conservation
Takane, K. & Kanai, A., 2011 Sep 27, In : Japanese Journal of Infectious Diseases. 64, 5, p. 357-366 10 p.Research output: Contribution to journal › Review article
10
Citations
(Scopus)
2010
A metabolic model of human erythrocytes: Practical application of the E-Cell Simulation Environment
Yachie-Kinoshita, A., Nishino, T., Shimo, H., Suematsu, M. & Tomita, M., 2010 Aug 13, In : Journal of Biomedicine and Biotechnology. 2010, 642420.Research output: Contribution to journal › Review article
17
Citations
(Scopus)
The DBCLS BioHackathon: Standardization and interoperability for bioinformatics web services and workflows
Katayama, T., Arakawa, K., Nakao, M., Ono, K., Aoki-Kinoshita, K. F., Yamamoto, Y., Yamaguchi, A., Kawashima, S., Chun, H. W., Aerts, J., Aranda, B., Barboza, L. H., Bonnal, R. J. P., Bruskiewich, R., Bryne, J. C., Fernández, J. M., Funahashi, A., Gordon, P. M. K., Goto, N., Groscurth, A. & 37 others, , 2010 Aug 21, In : Journal of Biomedical Semantics. 1, 8.Research output: Contribution to journal › Review article
21
Citations
(Scopus)
The treatment of menopausal symptoms by traditional East Asian medicines: Review and perspectives
Scheid, V., Ward, T., Cha, W. S., Watanabe, K. & Liao, X., 2010 Jun 1, In : Maturitas. 66, 2, p. 111-130 20 p.Research output: Contribution to journal › Review article
38
Citations
(Scopus)
Unveiling cellular biochemical reactions via metabolomics-driven approaches
Saito, N., Ohashi, Y., Soga, T. & Tomita, M., 2010 Jun 1, In : Current Opinion in Microbiology. 13, 3, p. 358-362 5 p.Research output: Contribution to journal › Review article
23
Citations
(Scopus)
2009
Can complex cellular processes be governed by simple linear rules?
Selvarajoo, K., Tomita, M. & Tsuchiya, M., 2009 May 11, In : Journal of Bioinformatics and Computational Biology. 7, 1, p. 243-268 26 p.Research output: Contribution to journal › Review article
14
Citations
(Scopus)
Disrupted tRNA gene diversity and possible evolutionary scenarios
Sugahara, J., Fujishima, K., Morita, K., Tomita, M. & Kanai, A., 2009 Nov 1, In : Journal of Molecular Evolution. 69, 5, p. 497-504 8 p.Research output: Contribution to journal › Review article
25
Citations
(Scopus)
Kampo medicine as an integrative medicine in Japan
Nishimura, K., Plotnikoff, G. A. & Watanabe, K., 2009 May 1, In : Japan Medical Association Journal. 52, 3, p. 147-149 3 p.Research output: Contribution to journal › Review article
25
Citations
(Scopus)
2008
Informatics for peptide retention properties in proteomic LC-MS
Shinoda, K., Sugimoto, M., Tomita, M. & Ishihama, Y., 2008 Feb 1, In : Proteomics. 8, 4, p. 787-798 12 p.Research output: Contribution to journal › Review article
31
Citations
(Scopus)
Palliative care in Japan: Current status and a nationwide challenge to improve palliative care by the cancer control act and the Outreach Palliative Care Trial of Integrated Regional Model (OPTIM) study
Yamagishi, A., Morita, T., Miyashita, M., Akizuki, N., Kizawa, Y., Shirahige, Y., Akiyama, M., Kei Hirai, H., Kudo, T., Yamaguchi, T., Fukushima, A. & Eguchi, K., 2008 Oct 1, In : American Journal of Hospice and Palliative Medicine. 25, 5, p. 412-418 7 p.Research output: Contribution to journal › Review article
40
Citations
(Scopus)
Proteins as networks: Usefulness of graph theory in protein science
Krishnan, A., Zbilut, J. P., Tomita, M. & Giuliani, A., 2008 Dec 1, In : Current Protein and Peptide Science. 9, 1, p. 28-38 11 p.Research output: Contribution to journal › Review article
78
Citations
(Scopus)
Stabilizing synthetic data in the DNA of living organisms
Yachie, N., Ohashi, Y. & Tomita, M., 2008 Jun 1, In : Systems and Synthetic Biology. 2, 1-2, p. 19-25 7 p.Research output: Contribution to journal › Review article
18
Citations
(Scopus)
2007
Metabolome analysis by capillary electrophoresis-mass spectrometry
Monton, M. R. N. & Soga, T., 2007 Oct 19, In : Journal of Chromatography A. 1168, 1-2, p. 237-246 10 p.Research output: Contribution to journal › Review article
229
Citations
(Scopus)
2006
Architectural implications of quantum computing technologies
Van Meter, R. & Oskin, M., 2006, In : ACM Journal on Emerging Technologies in Computing Systems. 2, 1, p. 31-63 33 p.Research output: Contribution to journal › Review article
52
Citations
(Scopus)
A whole genome cloning in the BGM vector
Itaya, M., Tsuge, K., Koizumi, M. & Fujita, K., 2006 Jan, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 51, 1, p. 61-67 7 p.Research output: Contribution to journal › Review article
English and multiculturalism - From the language user's perspective
Tanaka, S., 2006 Dec 1, In : RELC Journal. 37, 1, p. 47-66 20 p.Research output: Contribution to journal › Review article
6
Citations
(Scopus)
G-language System as a platform for large-scale analysis of high-throughput omics data
Arakawa, K. & Tomita, M., 2006 Aug 31, In : Journal of Pesticide Science. 31, 3, p. 282-288 7 p.Research output: Contribution to journal › Review article
26
Citations
(Scopus)
2005
All systems go: Launching cell simulation fueled by integrated experimental biology data
Arita, M., Robert, M. & Tomita, M., 2005 Jun, In : Current Opinion in Biotechnology. 16, 3 SPEC. ISS., p. 344-349 6 p.Research output: Contribution to journal › Review article
21
Citations
(Scopus)
Metabolome analysis and metabolic simulation
Ishii, N., Soga, T., Nishioka, T. & Tomita, M., 2005 Mar 1, In : Metabolomics. 1, 1, p. 29-37 9 p.Research output: Contribution to journal › Review article
13
Citations
(Scopus)
2004
A new role for expressed pseudogenes as ncRNA: Regulation of mRNA stability of is homologous coding gene
Yano, Y., Saito, R., Yoshida, N., Yoshiki, A., Wynshaw-Boris, A., Tomita, M. & Hirotsune, S., 2004 Jul, In : Journal of Molecular Medicine. 82, 7, p. 414-422 9 p.Research output: Contribution to journal › Review article
58
Citations
(Scopus)
Copyrighting digital libraries from database designer perspective
Sasaki, H. & Kiyoki, Y., 2004 Dec 1, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3334, p. 626-629 4 p.Research output: Contribution to journal › Review article
2
Citations
(Scopus)