• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
19962020

Research output per year

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  • 2017

    Requirement of spatiotemporal resolution for imaging intracellular temperature distribution

    Hiroi, N., Tanimoto, R., Ii, K., Ozeki, M., Mashimo, K. & Funahashi, A., 2017, Biomedical Imaging and Sensing Conference. SPIE, Vol. 10251. 102510Q

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2014

    Fabrication method to a high resolution control in the space of cell culturing environment with microfluidic system

    Hiraiwa, T., Kimura, T., Takenaka, Y., Tanamoto, R., Ota, H., Kimura, H., Taguchi, Y., Miki, N., Matsumoto, Y., Oka, K., Funahashi, A. & Hiroi, N., 2014 Jan 1, MEMS 2014 - 27th IEEE International Conference on Micro Electro Mechanical Systems. Institute of Electrical and Electronics Engineers Inc., p. 264-267 4 p. 6765626. (Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS)).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2013

    In vivo oriented modeling with consideration of intracellular crowding

    Hiroi, N., Iba, K., Tabira, A., Okuhara, T., Kubojima, T., Hiraiwa, T., Kobayashi, T. J., Oka, K. & Funahashi, A., 2013 Oct 31, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 2716-2719 4 p. 6610101. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • 2010

    A datapath classification method for FPGA-based scientific application accelerator systems

    Ogawa, Y., Ooya, T., Osana, Y., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N., Amano, H., Shibata, Y. & Oguri, K., 2010, Proceedings - 2010 International Conference on Field-Programmable Technology, FPT'10. p. 441-444 4 p. 5681455. (Proceedings - 2010 International Conference on Field-Programmable Technology, FPT'10).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2009

    A modular approach to heterogeneous biochemical model simulation on an FPGA

    Yamada, H., Osana, Y., Ishimori, T., Ooya, T., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N., Amano, H., Shibata, Y. & Oguri, K., 2009 Dec 1, ReConFig'09 - 2009 International Conference on ReConFigurable Computing and FPGAs. p. 125-130 6 p. 5382039. (ReConFig'09 - 2009 International Conference on ReConFigurable Computing and FPGAs).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

    Ooya, T., Yamada, H., Ishimori, T., Shibata, Y., Osana, Y., Oguri, K., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N. & Amano, H., 2009 Nov 25, FPL 09: 19th International Conference on Field Programmable Logic and Applications. p. 679-682 4 p. 5272335. (FPL 09: 19th International Conference on Field Programmable Logic and Applications).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Citations (Scopus)
  • 2008

    Practical implementation of a network-based Stochastic biochemical simulation system on an FPGA

    Yoshimi, M., Nishikawa, Y., Osana, Y., Funahashi, A., Hiroi, N., Shibata, Y., Yamada, H., Kitano, H. & Amano, H., 2008 Nov 3, Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL. p. 663-666 4 p. 4630034. (Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Citations (Scopus)
  • 2007

    A combining technique of rate law functions for a cost-effective reconfigurable biological simulator

    Yamada, H., Iwanaga, N., Shibata, Y., Osana, Y., Yoshimi, M., Iwaoka, Y., Nishikawa, Y., Kojima, T., Amano, H., Funahashi, A., Hiroi, N., Hiroaki Kitano, K. & Kiyoshi Oguri, O., 2007 Dec 1, Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL. p. 808-811 4 p. 4380774. (Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Citations (Scopus)
  • A framework for implementing a network-based stochastic biochemical simulator on an FPGA

    Yoshimi, M., Nishikawa, Y., Kojima, T., Osana, Y., Funahashi, A., Hiroi, N., Shibata, Y., Yamada, H., Kitano, H. & Amano, H., 2007 Dec 1, ICFPT 2007 - International Conference on Field Programmable Technology. p. 193-200 8 p. 4439249. (ICFPT 2007 - International Conference on Field Programmable Technology).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • FPGA implementation of a data-driven stochastic biochemical simulator with the next reaction method

    Yoshimi, M., Iwaoka, Y., Nishikawa, Y., Kojima, T., Osana, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Yamada, H., Kitano, H. & Amano, H., 2007 Dec 1, Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL. p. 254-259 6 p. 4380656. (Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    14 Citations (Scopus)
  • 2006

    An FPGA implementation of high throughput stochastic simulator for large-scale biochemical systems

    Yoshimi, M., Osana, Y., Iwaoka, Y., Nishikawa, Y., Kojima, T., Shibata, Y., Iwanaga, N., Funahashi, A., Hiroi, N., Kitano, H. & Amano, H., 2006 Dec 1, Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL. p. 227-232 6 p. 4100980. (Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Citations (Scopus)
  • Celldesigner: A modeling tool for biochemical networks

    Funahashi, A., Matsuoka, Y., Jouraku, A., Kitano, H. & Kikuchi, N., 2006 Dec 1, Proceedings of the 2006 Winter Simulation Conference, WSC. p. 1707-1712 6 p. 4117804. (Proceedings - Winter Simulation Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    20 Citations (Scopus)
  • Performance evaluation of an FPGA-based biochemical simulator ReCSiP

    Osana, Y., Yoshimi, M., Iwaoka, Y., Kojima, T., Nishikawa, Y., Funahashi, A., Hiroi, N., Kitano, H., Amano, H., Shibata, Y. & Iwanaga, N., 2006 Dec 1, Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL. p. 845-850 6 p. 4101089. (Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Citations (Scopus)
  • 2005

    A framework for ODE-based multimodel biochemical simulations on an FPGA

    Osana, Y., Fukushima, T., Yoshimi, M., Iwaoka, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H. & Amano, H., 2005 Dec 1, Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL. p. 574-577 4 p. 1515788. (Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Citations (Scopus)
  • An FPGA-based, multi-model simulation method for biochemical systems

    Osana, Y., Fukushima, T., Yoshimi, M., Iwaoka, Y., Funahashi, A., Hiroi, N., Shibata, Y., Kitano, H. & Amano, H., 2005 Dec 1, Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005. 1420035. (Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Citations (Scopus)
  • Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA

    Iwanagra, N., Shibata, Y., Yoshimi, M., Osana, Y., Iwaoka, Y., Fukushima, T., Amano, H., Funahashi, A., Hiroi, N., Kitano, H. & Oguri, K., 2005 Dec 1, Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL. p. 666-669 4 p. 1515809. (Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    10 Citations (Scopus)
  • The design of scalable stochastic biochemical simulator on FPGA

    Yoshimi, M., Osana, Y., Iwaoka, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H. & Amano, H., 2005 Dec 1, Proceedings - 2005 IEEE International Conference on Field Programmable Technology. p. 339-340 2 p. 1568590. (Proceedings - 2005 IEEE International Conference on Field Programmable Technology; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Citations (Scopus)
  • 2002

    Routing algorithms based on 2D turn model for irregular networks

    Jouraku, A., Koibuchi, M., Amano, H. & Funahashi, A., 2002 Jan 1, Proceedings - International Symposium on Parallel Architectures, Algorithms and Networks, I-SPAN 2002. Hsu, D. F., Saldana, R. P. & Ibarra, O. H. (eds.). IEEE Computer Society, p. 289-294 6 p. 1004296. (Proceedings of the International Symposium on Parallel Architectures, Algorithms and Networks, I-SPAN; vol. 2002-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Citations (Scopus)
  • 2001

    L-turn routing: An adaptive routing in irregular networks

    Koibuchi, M., Funahashi, A., Jouraku, A. & Amano, H., 2001, Proceedings of the International Conference on Parallel Processing. Institute of Electrical and Electronics Engineers Inc., Vol. 2001-January. p. 383-392 10 p. 952084

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    48 Citations (Scopus)
  • 1997

    Adaptive routing on the recursive diagonal torus

    Funahashi, A., Hanawa, T., Kudoh, T. & Amano, H., 1997, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 1336. p. 171-182 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1336).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)