• 959 Citations
  • 17 h-Index
20042020

Research output per year

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Research Output

  • 959 Citations
  • 17 h-Index
  • 51 Article
  • 1 Editorial
  • 1 Review article
2020

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

MetaSUB Consortium, 2020, (Accepted/In press) In : Nature medicine.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes

Tokuda, M., Suzuki, H., Yanagiya, K., Yuki, M., Inoue, K., Ohkuma, M., Kimbara, K. & Shintani, M., 2020 Jun 9, In : Frontiers in Microbiology. 11, 1187.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Draft Genome Sequence of Geobacter sp. Strain SVR, Isolated from Antimony Mine Soil

Warashina, T., Harada, M., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H. & Amachi, S., 2020 Jun 25, In : Microbiology Resource Announcements. 9, 26, e00461-20.

Research output: Contribution to journalArticle

Open Access
2019

Comparative genomics of Bacteria commonly identified in the built environment

Merino, N., Zhang, S., Tomita, M. & Suzuki, H., 2019 Jan 28, In : BMC Genomics. 20, 1, 92.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Genomic analysis of Pseudomonas sp. Strain SCT, an iodate-reducing bacterium isolated from marine sediment, reveals a possible use for bioremediation

Harada, M., Ito, K., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H. & Amachi, S., 2019 May 1, In : G3: Genes, Genomes, Genetics. 9, 5, p. 1321-1329 9 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life

Saito, M., Sato, A., Nagata, S., Tamaki, S., Tomita, M., Suzuki, H. & Kanai, A., 2019 Sep 25, In : Genome biology and evolution. 11, 10, p. 2713-2726 14 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Reconsidering plasmid maintenance factors for computational plasmid design

Yano, H., Shintani, M., Tomita, M., Suzuki, H. & Oshima, T., 2019 Jan 1, In : Computational and Structural Biotechnology Journal. 17, p. 70-81 12 p.

Research output: Contribution to journalReview article

5 Citations (Scopus)

The recombination-cold region as an epidemiological marker of recombinogenic opportunistic pathogen Mycobacterium avium

Yano, H., Suzuki, H., Maruyama, F. & Iwamoto, T., 2019 Oct 17, In : BMC Genomics. 20, 1, 752.

Research output: Contribution to journalArticle

Open Access
2018

Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago

Ohta, T., Kawashima, T., Shinozaki, N. O., Dobashi, A., Hiraoka, S., Hoshino, T., Kanno, K., Kataoka, T., Kawashima, S., Matsui, M., Nemoto, W., Nishijima, S., Suganuma, N., Suzuki, H., Taguchi, Y. H., Takenaka, Y., Tanigawa, Y., Tsuneyoshi, M., Yoshitake, K., Sato, Y. & 3 others, Yamashita, R., Arakawa, K. & Iwasaki, W., 2018 Jul 1, In : Journal of Plant Research. 131, 4, p. 709-717 9 p.

Research output: Contribution to journalArticle

Focusing the diversity of Gardnerella vaginalis through the lens of ecotypes

Cornejo, O. E., Hickey, R. J., Suzuki, H. & Forney, L. J., 2018 Mar, In : Evolutionary Applications. 11, 3, p. 312-324 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Identification of novel Legionella genes required for endosymbiosis in Paramecium based on comparative genome analysis with Holospora spp

Watanabe, K., Suzuki, H., Nishida, T., Mishima, M., Tachibana, M., Fujishima, M., Shimizu, T. & Watarai, M., 2018 Nov 1, In : FEMS microbiology ecology. 94, 11

Research output: Contribution to journalArticle

1 Citation (Scopus)
4 Citations (Scopus)
2017

Comparative genomic analysis of Clostridium difficile ribotype 027 strains including the newly sequenced strain NCKUH-21 isolated from a patient in Taiwan

Suzuki, H., Tomita, M., Tsai, P. J., Ko, W. C., Hung, Y. P., Huang, I. H. & Chen, J. W., 2017 Nov 29, In : Gut Pathogens. 9, 1, 70.

Research output: Contribution to journalArticle

2016

Christopher-Hennings J, Tomita M, Suzuki H, Scaria J. 2016. Draft genome sequences of 37 Salmonella enterica strains isolated from poultry sources in Nigeria

Useh, N. M., Ngbede, E. O., Akange, N., Thomas, M., Foley, A., Keena, M. C., Nelson, E., Christopher-Hennings, J., Tomita, M., Suzuki, H. & Scaria, J., 2016, In : Genome Announcements. 4, 3, e00315-16.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Codon adaptation of plastid genes

Suzuki, H. & Morton, B. R., 2016 May 1, In : PloS one. 11, 5, e0154306.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Draft genome sequence of Arenibacter sp. strain C-21, an iodine-accumulating bacterium isolated from surface marine sediment

Ito, K., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H. & Amachi, S., 2016, In : Genome Announcements. 4, 5, e01155-16.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Draft genome sequence of pseudomonas sp. nov. H2

Loftie-Eaton, W., Suzuki, H., Bashford, K., Heuer, H., Stragier, P., Vos, P. D., Settles, M. L. & Topa, E. M., 2016, In : Genome Announcements. 3, 2, e00241-15.

Research output: Contribution to journalArticle

The metagenomics and metadesign of the subways and Urban biomes (MetaSUB) international consortium inaugural meeting report

The MetaSUB International Consortium, 2016 Jan 1, In : Microbiome. 4, 24.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2015

Analysis of amino acid and codon usage in Paramecium bursaria

Dohra, H., Fujishima, M. & Suzuki, H., 2015 Oct 7, In : FEBS Letters. 589, 20, p. 3113-3118 6 p., 37343.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference

Scaria, J., Suzuki, H., Ptak, C. P., Chen, J. W., Zhu, Y., Guo, X. K. & Chang, Y. F., 2015 Dec 12, In : BMC Genomics. 16, 1, 448.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Draft genome sequence of Anaeromyxobacter sp. strain PSR-1, an arsenate-respiring bacterium isolated from arseniccontaminated soil

Tonomura, M., Ehara, A., Suzuki, H. & Amachi, S., 2015, In : Genome Announcements. 3, 3, e00472-15.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Draft genome sequence of Caedibacter varicaedens, a kappa killer endosymbiont bacterium of the ciliate Paramecium biaurelia

Suzuki, H., Dapper, A. L., Jackson, C. E., Lee, H., Pejaver, V., Doak, T. G., Lynch, M. & Preer, J. R., 2015 Jan 1, In : Genome Announcements. 3, 6, e0131015.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Draft genome sequence of Geobacter sp. strain OR-1, an arsenate-respiring bacterium isolated from Japanese paddy soil

Ehara, A., Suzuki, H. & Amachi, S., 2015, In : Genome Announcements. 3, 1, e01478-14.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Draft genome sequence of Gluconobacter thailandicus NBRC 3257

Matsutani, M., Suzuki, H., Yakushi, T. & Matsushita, K., 2015 Oct 30, In : Standards in Genomic Sciences. 9, 3, p. 614-623 10 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Draft genome sequences of five Legionella pneumophila strains isolated from environmental water samples

Watanabe, K., Suzuki, H., Nakao, R., Shimizu, T. & Watarai, M., 2015, In : Genome Announcements. 3, 3, e00474-15.

Research output: Contribution to journalArticle

3 Citations (Scopus)

High-throughput screening for biomarker discovery

Janvilisri, T., Suzuki, H., Scaria, J., Chen, J. W. & Charoensawan, V., 2015 Jan 1, In : Disease Markers. 2015, 108064.

Research output: Contribution to journalEditorial

2 Citations (Scopus)
2014

Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment

Mendes-Soares, H., Suzuki, H., Hickey, R. J. & Forneya, L. J., 2014 Apr, In : Journal of Bacteriology. 196, 7, p. 1458-1470 13 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts

Kodama, Y., Suzuki, H., Dohra, H., Sugii, M., Kitazume, T., Yamaguchi, K., Shigenobu, S. & Fujishima, M., 2014 Mar 10, In : BMC Genomics. 15, 1, 183.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Draft genome sequence of strain Q-1, an iodide-oxidizing alphaproteobacterium isolated from natural gas brine water

Ehara, A., Suzuki, H., Kanesaki, Y., Yoshikawa, H. & Amachi, S., 2014, In : Genome Announcements. 2, 4, e00659-14.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum

Dohra, H., Tanaka, K., Suzuki, T., Fujishima, M. & Suzuki, H., 2014 Jan 1, In : FEMS microbiology letters. 359, 1, p. 16-18 3 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Inflammation-associated adherent-invasive escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation

Dogan, B., Suzuki, H., Herlekar, D., Sartor, B. R. B., Campbell, B. J., Roberts, C. L., Stewart, K., Scherl, E. J., Araz, Y., Bitar, P. P., Lefébure, T., Chandler, B., Schukken, Y. H., Stanhope, M. J. & Simpson, K. W., 2014 Nov 1, In : Inflammatory bowel diseases. 20, 11, p. 1919-1932 14 p.

Research output: Contribution to journalArticle

63 Citations (Scopus)
2013

Characterization of the heart transcriptome of the white shark (Carcharodoncarcharias)

Richards, V. P., Suzuki, H., Stanhope, M. J. & Shivji, M. S., 2013 Oct 11, In : BMC Genomics. 14, 1, 697.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Complete genome sequence of the porcine strain Brachyspira pilosicoli P43/6/78T

Lin, C., den Bakker, H. C., Suzuki, H., Lefébure, T., Ponnala, L., Sun, Q., Stanhope, M. J., Wiedmann, M. & Duhamel, G. E., 2013 Jan 1, In : Genome Announcements. 1, 1, e00215-12.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Draft genome sequence of Holospora undulata strain HU1, a micronucleus-specific symbiont of the ciliate Paramecium caudatum

Dohra, H., Suzuki, H., Suzuki, T., Tanaka, K. & Fujishima, M., 2013, In : Genome Announcements. 1, 4, e00664-13.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2012

Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae

Suzuki, H., Lefébure, T., Bitar, P. P. & Stanhope, M. J., 2012 Jan 24, In : BMC Genomics. 13, 1, 38.

Research output: Contribution to journalArticle

38 Citations (Scopus)

Functional bias of positively selected genes in Streptococcus genomes

Suzuki, H. & Stanhope, M. J., 2012 Mar 1, In : Infection, Genetics and Evolution. 12, 2, p. 274-277 4 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2011

Comparative genomic analysis of the Streptococcus dysgalactiae species group: Gene content, molecular adaptation, and promoter evolution

Suzuki, H., Lefébure, T., Hubisz, M. J., Bitar, P. P., Lang, P., Siepe, A. & Stanhope, M. J., 2011, In : Genome biology and evolution. 3, 1, p. 168-185 18 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2010

Comparative genomics of pAKD4, the prototype IncP-1δ plasmid with a complete backbone

Sen, D., Yano, H., Suzuki, H., Król, J. E., Rogers, L., Brown, C. J. & Top, E. M., 2010 Mar, In : Plasmid. 63, 2, p. 98-107 10 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

Lefébure, T., Bitar, P. D. P., Suzuki, H. & Stanhope, M. J., 2010, In : Genome biology and evolution. 2, 1, p. 646-655 10 p.

Research output: Contribution to journalArticle

69 Citations (Scopus)

Predicting plasmid promiscuity based on genomic signature

Suzuki, H., Yano, H., Brown, C. J. & Top, E. M., 2010 Nov, In : Journal of Bacteriology. 192, 22, p. 6045-6055 11 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)

The vaginal bacterial communities of Japanese women resemble those of women in other racial groups

Zhou, X., Hansmann, M. A., Davis, C. C., Suzuki, H., Brown, C. J., Schütte, U., Pierson, J. D. & Forney, L. J., 2010 Mar, In : FEMS Immunology and Medical Microbiology. 58, 2, p. 169-181 13 p.

Research output: Contribution to journalArticle

104 Citations (Scopus)
2009

Measure of synonymous codon usage diversity among genes in bacteria

Suzuki, H., Saito, R. & Tomita, M., 2009 Jun 1, In : BMC bioinformatics. 10, 167.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Plasmids captured in C. metallidurans CH34: Defining the PromA family of broad-host-range plasmids

Van der Auwera, G. A., Król, J. E., Suzuki, H., Foster, B., Van Houdt, R., Brown, C. J., Mergeay, M. & Top, E. M., 2009 Mar 4, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 96, 2 SPEC. ISS., p. 193-204 12 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)
20 Citations (Scopus)
2008

Comparison of correspondence analysis methods for synonymous codon usage in bacteria

Suzuki, H., Brown, C. J., Forney, L. J. & Top, E. M., 2008 Dec, In : DNA Research. 15, 6, p. 357-365 9 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes

Suzuki, H., Sota, M., Brown, C. J. & Top, E. M., 2008 Dec, In : Nucleic acids research. 36, 22, p. e147

Research output: Contribution to journalArticle

35 Citations (Scopus)
2007

Modelling the spatial dynamics of plasmid transfer and persistence

Krone, S. M., Lu, R., Fox, R., Suzuki, H. & Top, E. M., 2007 Aug, In : Microbiology. 153, 8, p. 2803-2816 14 p.

Research output: Contribution to journalArticle

56 Citations (Scopus)

Proteome-wide prediction of novel DNA/RNA-binding proteins using amino acid composition and periodicity in the hyperthermophilic archaeon pyrococcus furiosus

Fujishima, K., Komasa, M., Kitamura, S., Suzuki, H., Tomita, M. & Kanai, A., 2007 Jun, In : DNA Research. 14, 3, p. 91-102 12 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids

Sota, M., Tsuda, M., Yano, H., Suzuki, H., Forney, L. J. & Top, E. M., 2007 Apr, In : Journal of Bacteriology. 189, 8, p. 3091-3098 8 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
5 Citations (Scopus)