• 4244 Citations
  • 37 h-Index
1994 …2020

Research output per year

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Research Output

2010

Molecular simulation at solid-liquid interface

Yasuoka, K., Koishi, T., Mlma, T. & Arai, N., 2010, In : Toraibarojisuto/Journal of Japanese Society of Tribologists. 55, 4, p. 236-241 6 p.

Research output: Contribution to journalArticle

Phase diagram of Lennard-Jones fluid confined in slit pores

Kaneko, T., Mima, T. & Yasuoka, K., 2010 Apr 26, In : Chemical Physics Letters. 490, 4-6, p. 165-171 7 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2009

42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence

Hamada, T., Narumi, T., Yokota, R., Yasuoka, K., Nitadori, K. & Taiji, M., 2009 Dec 1, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, SC '09. 1654123. (Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, SC '09).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

83 Citations (Scopus)

Coexistence and transition between Cassie and Wenzel state on pillared hydrophobic surface

Koishi, T., Yasuoka, K., Fujikawa, S., Ebisuzaki, T. & Xiao, C. Z., 2009 May 26, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 21, p. 8435-8440 6 p.

Research output: Contribution to journalArticle

296 Citations (Scopus)

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced poisson boltzmann approach

Narumi, T., Yasuoka, K., Taiji, M. & Höfinger, S., 2009 Nov 15, In : Journal of Computational Chemistry. 30, 14, p. 2351-2357 7 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence

Yokota, R., Narumi, T., Sakamaki, R., Kameoka, S., Obi, S. & Yasuoka, K., 2009 Nov 1, In : Computer Physics Communications. 180, 11, p. 2066-2078 13 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

Formation of nuclear "pasta" in supernovae

Watanabe, G., Sonoda, H., Maruyama, T., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2009 Sep 14, In : Physical review letters. 103, 12, 121101.

Research output: Contribution to journalArticle

69 Citations (Scopus)

JINR CICC in computational chemistry and nanotechnology problems: DL_POLY performance for different communication architectures

Dushanov, E., Kholmurodov, K., Aru, G., Korenkov, V., Smith, W., Ohno, Y., Narumi, T., Morimoto, G., Taiji, M. & Yasuoka, K., 2009 Jun 10, In : Physics of Particles and Nuclei Letters. 6, 3, p. 251-259 9 p.

Research output: Contribution to journalArticle

Microscopic insights into nucleation in a sulfuric acid-water vapor mixture based on molecular dynamics simulation

Matsubara, H., Ebisuzaki, T. & Yasuoka, K., 2009 Mar 24, In : Journal of Chemical Physics. 130, 10, 104705.

Research output: Contribution to journalArticle

11 Citations (Scopus)
12 Citations (Scopus)

Using special-Purpose and video-game computers for accelerating molecular dynamics simulations

Narumi, T., Sakamaki, R., Kameoka, S. & Yasuoka, K., 2009 Dec 1, Molecular Simulation in Material and Biological Research. Nova Science Publishers, Inc., p. 29-40 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Accelerating molecular dynamics simulations on playstation 3 platform using virtual-grape programming model

Narumi, T., Kameoka, S., Taiji, M. & Yasuoka, K., 2008, In : SIAM Journal on Scientific Computing. 30, 6, p. 3108-3125 18 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Cell size dependence of orientational order of uniaxial liquid crystals in flat slit

Mima, T., Narumi, T., Kameoka, S. & Yasuoka, K., 2008 Jul 1, In : Molecular Simulation. 34, 8, p. 761-773 13 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Dissipative particle dynamics studies on the self-assembling dynamics of the peptide amphiphiles

Seki, T., Arai, N., Ozawa, T., Shimada, T., Yasuoka, K. & Hotta, A., 2008, Design, Fabrication, and Self Assembly of "Patchy" and Anisometric Particles. Materials Research Society, p. 143-149 7 p. (Materials Research Society Symposium Proceedings; vol. 1135).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

17 Citations (Scopus)

Liquid-vapor nucleation simulation of Lennard-Jones fluid by molecular dynamics method

Sekine, M., Yasuoka, K., Kinjo, T. & Matsumoto, M., 2008 Jul 1, In : Fluid Dynamics Research. 40, 7-8, p. 597-605 9 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Overheads in accelerating molecular dynamics simulations with GPUs

Narumi, T., Sakamaki, R., Kameoka, S. & Yasuoka, K., 2008 Dec 1, Proceedings - 9th International Conference on Parallel and Distributed Computing, Applications and Technologies, PDCAT 2008. p. 143-150 8 p. 4710974. (Parallel and Distributed Computing, Applications and Technologies, PDCAT Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Citations (Scopus)

Phase diagram of nuclear "pasta" and its uncertainties in supernova cores

Sonoda, H., Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2008 Mar 25, In : Physical Review C - Nuclear Physics. 77, 3, 035806.

Research output: Contribution to journalArticle

71 Citations (Scopus)

Self-assembly of surfactants and polymorphic transition in nanotubes

Arai, N., Yasuoka, K. & Zeng, X. C., 2008 Jun 25, In : Journal of the American Chemical Society. 130, 25, p. 7916-7920 5 p.

Research output: Contribution to journalArticle

74 Citations (Scopus)
2007

Anisotropic molecular clustering in liquid ethanol induced by a charged fully hydroxylated silicon dioxide (SiO2) surface

Andoh, Y., Kurahashi, K., Sakuma, H., Yasuoka, K. & Kurihara, K., 2007 Nov 14, In : Chemical Physics Letters. 448, 4-6, p. 253-257 5 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Cutoff radius effect of isotropic periodic sum method for transport coefficients of Lennard-Jones liquid

Takahashi, K., Yasuoka, K. & Narumi, T., 2007 Sep 28, In : Journal of Chemical Physics. 127, 11, 114511.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Extended study of molecular dynamics simulation of homogeneous vapor-liquid nucleation of water

Matsubara, H., Koishi, T., Ebisuzaki, T. & Yasuoka, K., 2007 Dec 14, In : Journal of Chemical Physics. 127, 21, 214507.

Research output: Contribution to journalArticle

39 Citations (Scopus)

Fast vortex method calculation using a special-purpose computer

Sheel, T. K., Yasuoka, K. & Obi, S., 2007 Sep 1, In : Computers and Fluids. 36, 8, p. 1319-1326 8 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Impact of nuclear "pasta" on neutrino transport in collapsing stellar cores

Sonoda, H., Watanabe, G., Sato, K., Takiwaki, T., Yasuoka, K. & Ebisuzaki, T., 2007 Apr 6, In : Physical Review C - Nuclear Physics. 75, 4, 042801.

Research output: Contribution to journalArticle

45 Citations (Scopus)
30 Citations (Scopus)

Molecular dynamics simulation of time-irreversibility of stationary heat flux

Mima, T., Yasuoka, K. & Nosé, S., 2007 Jan 1, In : Molecular Simulation. 33, 1-2, p. 109-113 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Molecular dynamics simulations of structure-H hydrates formed with methane and 3,3-dimethylpentane or 2,2-dimethylpentane

Miyoshi, T., Ohmura, R. & Yasuoka, K., 2007 Jan 1, In : Molecular Simulation. 33, 1-2, p. 65-69 5 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Molecular understanding of dynamical properties of the vapor/ethanol- aqueous-solution interface

Andoh, Y. & Yasuoka, K., 2007 Jan 1, In : Molecular Simulation. 33, 1-2, p. 139-145 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
1 Citation (Scopus)
9 Citations (Scopus)

Spontaneous self-assembly process for threadlike micelles

Arai, N., Yasuoka, K. & Masubuchi, Y., 2007 Aug 2, In : Journal of Chemical Physics. 126, 24, 244905.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Thermodynamic stability of type-I and type-II clathrate hydrates depending on the chemical species of the guest substances

Miyoshi, T., Imai, M., Ohmura, R. & Yasuoka, K., 2007 Aug 2, In : Journal of Chemical Physics. 126, 23, 234506.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2006

Free-energy calculation of structure-H hydrates

Okano, Y. & Yasuoka, K., 2006 Jan 23, In : Journal of Chemical Physics. 124, 2, 024510.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Hydrogen-bonded clusters on the vapor/ethanol-aqueous-solution interface

Andoh, Y. & Yasuoka, K., 2006 Nov 23, In : Journal of Physical Chemistry B. 110, 46, p. 23264-23273 10 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)
2005

Large-scale molecular-dynamics simulation of nanoscale hydrophobic interaction and nanobubble formation

Koishi, T., Yasuoka, K., Ebisuzaki, T., Yoo, S. & Zeng, X. C., 2005, In : Journal of Chemical Physics. 123, 20, 204707.

Research output: Contribution to journalArticle

47 Citations (Scopus)

Simulation of transitions between "pasta" phases in dense matter

Watanabe, G., Maruyama, T., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2005 Jan 28, In : Physical review letters. 94, 3, 031101.

Research output: Contribution to journalArticle

87 Citations (Scopus)

Thermodynamic simulations of isobaric hydrate-forming operations: Formulation of computational scheme and its application to hydrate formation from a methane + ethane + propane mixture

Tsuji, H., Kobayashi, T., Okano, Y., Ohmura, R., Yasuoka, K. & Mori, Y. H., 2005 Jul 1, In : Energy and Fuels. 19, 4, p. 1587-1597 11 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Two-dimensional supercritical behavior of an ethanol monolayer: A molecular dynamics study

Andoh, Y. & Yasuoka, K., 2005 Nov 8, In : Langmuir. 21, 23, p. 10885-10894 10 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2004

Nanoscale hydrophobic interaction and nanobubble nucleation

Koishi, T., Yoo, S., Yasuoka, K., Zeng, X. C., Narumi, T., Susukita, R., Kawai, A., Furusawa, H., Suenaga, A., Okimoto, N., Futatsugi, N. & Ebisuzaki, T., 2004 Oct 29, In : Physical review letters. 93, 18, p. 185701-1-185701-4 185701.

Research output: Contribution to journalArticle

84 Citations (Scopus)

Phases of hot nuclear matter at subnuclear densities

Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2004 May, In : Physical Review C - Nuclear Physics. 69, 5, p. 055805-1-055805-14 055805.

Research output: Contribution to journalArticle

55 Citations (Scopus)

Simulations of magnetic materials with MDGRAPE-2

Elmegreen, B. G., Koch, R. H., Schabes, M. E., Crawford, T., Ebisuzaki, T., Furusawa, H., Narumi, T., Susukita, R. & Yasuoka, K., 2004 Mar, In : IBM Journal of Research and Development. 48, 2, p. 199-207 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Tyr-317 Phosphorylation Increases Shc Structural Rigidity and Reduces Coupling of Domain Motions Remote from the Phosphorylation Site as Revealed by Molecular Dynamics Simulations

Suenaga, A., Kiyatkin, A. B., Hatakeyama, M., Futatsugi, N., Okimoto, N., Hirano, Y., Narumi, T., Kawai, A., Susukita, R., Koishi, T., Furusawa, H., Yasuoka, K., Takada, N., Ohno, Y., Taiji, M., Ebisuzaki, T., Hoek, J. B., Konagaya, A. & Kholodenko, B. N., 2004 Feb 6, In : Journal of Biological Chemistry. 279, 6, p. 4657-4662 6 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)
2003

Hardware accelerator for molecular dynamics: MDGRAPE-2

Susukita, R., Ebisuzaki, T., Elmegreen, B. G., Furusawa, H., Kato, K., Kawai, A., Kobayashi, Y., Koishi, T., McNiven, G. D., Narumi, T. & Yasuoka, K., 2003 Oct 1, In : Computer Physics Communications. 155, 2, p. 115-131 17 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)

Large scale molecular dynamics simulation of nucleation in supercooled NaCl

Koishi, T., Yasuoka, K. & Ebisuzaki, T., 2003 Dec 1, In : Journal of Chemical Physics. 119, 21, p. 11298-11305 8 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Microscopic study of nuclear "pasta": Quantum molecular dynamics approach

Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2003 Jul 28, In : Nuclear Physics A. 723, 1-2, p. 700c-702c

Research output: Contribution to journalArticle

Molecular dynamics study on class A β-lactamase: Hydrogen bond network among the functional groups of penicillin G and side chains of the conserved residues in the active site

Fujii, Y., Okimoto, N., Hata, M., Narumi, T., Yasuoka, K., Susukita, R., Suenaga, A., Futatsugi, N., Koishi, T., Furusawa, H., Kawai, A., Ebisuzaki, T., Neya, S. & Hoshino, T., 2003 Sep 18, In : Journal of Physical Chemistry B. 107, 37, p. 10274-10283 10 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
113 Citations (Scopus)

Structure of cold nuclear matter at subnuclear densities by quantum molecular dynamics

Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2003 Sep, In : Physical Review C - Nuclear Physics. 68, 3, p. 358061-3580620 3222560 p., 035806.

Research output: Contribution to journalArticle

68 Citations (Scopus)

Structure of cold nuclear matter at subnuclear densities by quantum molecular dynamics

Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2003 Jan 1, In : Physical Review C - Nuclear Physics. 68, 3, 1 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2002

Microscopic study of nuclear "Pasta" by quantum molecular dynamics

Watanabe, G., Sato, K., Yasuoka, K. & Ebisuzaki, T., 2002, In : Progress of Theoretical Physics. 146 SUPPL., p. 638-639 2 p.

Research output: Contribution to journalArticle

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