• 3749 Citations
  • 26 h-Index
1988 …2019
If you made any changes in Pure these will be visible here soon.

Research Output 1988 2019

  • 3749 Citations
  • 26 h-Index
  • 82 Article
  • 11 Chapter
  • 2 Editorial
Filter
Article
2019
Muramidase
Tryptophan
Hydration
Molecules
Water
2018
1 Citation (Scopus)

Blue light– excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from arabidopsis

Oide, M., Okajima, K., Nakagami, H., Kato, T., Sekiguchi, Y., Oroguchi, T., Hikima, T., Yamamoto, M. & Nakasako, M., 2018 Jan 1, In : Journal of Biological Chemistry. 293, 3, p. 963-972 10 p.

Research output: Contribution to journalArticle

Arabidopsis
Phosphotransferases
Light
Dimers
Photosynthesis

Classification of ab initio models of proteins restored from small-angle X-ray scattering

Oide, M., Sekiguchi, Y., Fukuda, A., Okajima, K., Oroguchi, T. & Nakasako, M., 2018 Sep 1, In : Journal of Synchrotron Radiation. 25, 5, p. 1379-1388 10 p.

Research output: Contribution to journalArticle

X ray scattering
proteins
Proteins
scattering
x rays

Diffraction apparatus and procedure in tomography X-ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X-ray radiation

Kobayashi, A., Takayama, Y., Okajima, K., Oide, M., Yamamoto, T., Sekiguchi, Y., Oroguchi, T., Nakasako, M., Kohmura, Y., Yamamoto, M., Hoshi, T. & Torizuka, Y., 2018 Jan 1, (Accepted/In press) In : Journal of Synchrotron Radiation.

Research output: Contribution to journalArticle

cryogenic temperature
Synchrotrons
Cryogenics
Tomography
synchrotrons
2 Citations (Scopus)

Growth of cuprous oxide particles in liquid-phase synthesis investigated by X-ray laser diffraction

Oroguchi, T., Yoshidome, T., Yamamoto, T. & Nakasako, M., 2018 May 28, (Accepted/In press) In : Nano Letters.

Research output: Contribution to journalArticle

X ray lasers
Carrier concentration
liquid phases
Diffraction
Surface-Active Agents
8 Citations (Scopus)

Shot-by-shot characterization of focused X-ray free electron laser pulses

Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Yamamoto, M. & Nakasako, M., 2018 Dec 1, In : Scientific Reports. 8, 1, 831.

Research output: Contribution to journalArticle

free electron lasers
shot
pulses
visibility
x rays
2017
3 Citations (Scopus)
retrieval
Imaging techniques
X ray diffraction
Carrier concentration
Diffraction patterns
3 Citations (Scopus)

Common structural features of toxic intermediates from α-synuclein and GroES fibrillogenesis detected using cryogenic coherent X-ray diffraction imaging

Kameda, H., Usugi, S., Kobayashi, M., Fukui, N., Lee, S., Hongo, K., Mizobata, T., Sekiguchi, Y., Masaki, Y., Kobayashi, A., Oroguchi, T., Nakasako, M., Takayama, Y., Yamamoto, M. & Kawata, Y., 2017 Jan 1, In : Journal of Biochemistry. 161, 1, p. 55-65 11 p.

Research output: Contribution to journalArticle

Synucleins
Poisons
X-Ray Diffraction
Cryogenics
Imaging techniques
8 Citations (Scopus)

Controlled Terahertz Birefringence in Stretched Poly(lactic acid) Films Investigated by Terahertz Time-Domain Spectroscopy and Wide-Angle X-ray Scattering

Iwasaki, H., Nakamura, M., Komatsubara, N., Okano, M., Nakasako, M., Sato, H. & Watanabe, S., 2017 Jul 20, In : Journal of Physical Chemistry B. 121, 28, p. 6951-6957 7 p.

Research output: Contribution to journalArticle

Birefringence
lactic acid
Lactic acid
X ray scattering
birefringence
4 Citations (Scopus)
Molecular dynamics
Hydrogen bonds
Amino Acids
Atoms
Electrons
2016
3 Citations (Scopus)

Blue light-excited light-oxygen-voltage-sensing domain 2 (LOV2) triggers a rearrangement of the kinase domain to induce phosphorylation activity in arabidopsis phototropin

Oide, M., Okajima, K., Kashojiya, S., Takayama, Y., Oroguchi, T., Hikima, T., Yamamoto, M. & Nakasako, M., 2016 Sep 16, In : Journal of Biological Chemistry. 291, 38, p. 19975-19984 10 p.

Research output: Contribution to journalArticle

Phototropins
Phosphorylation
Arabidopsis
Phosphotransferases
Oxygen
15 Citations (Scopus)
Water
Proteins
Hydrogen
Protein Domains
Molecular Dynamics Simulation
19 Citations (Scopus)
Carrier concentration
Imaging techniques
X ray diffraction
diffraction
Diffraction patterns
12 Citations (Scopus)

Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA

Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide, M., Yamamoto, M. & Nakasako, M., 2016 Jul 1, In : Journal of Synchrotron Radiation. 23, 4, p. 975-989 15 p.

Research output: Contribution to journalArticle

X ray lasers
Specimen preparation
organelles
Free electron lasers
free electron lasers
15 Citations (Scopus)

TAKASAGO-6 apparatus for cryogenic coherent X-ray diffraction imaging of biological non-crystalline particles using X-ray free electron laser at SACLA

Kobayashi, A., Sekiguchi, Y., Takayama, Y., Oroguchi, T., Shirahama, K., Torizuka, Y., Manoda, M., Nakasako, M. & Yamamoto, M., 2016 May 1, In : Review of Scientific Instruments. 87, 5, 053109.

Research output: Contribution to journalArticle

X ray lasers
Free electron lasers
free electron lasers
Cryogenics
cryogenics
2015
6 Citations (Scopus)
X-ray Laser
Free Electron Laser
x ray lasers
polymorphism
Polymorphism
24 Citations (Scopus)

Coherent X-ray diffraction imaging of chloroplasts from Cyanidioschyzon merolae by using X-ray free electron laser

Takayama, Y., Inui, Y., Sekiguchi, Y., Kobayashi, A., Oroguchi, T., Yamamoto, M., Matsunaga, S. & Nakasako, M., 2015, In : Plant and Cell Physiology. 56, 7, p. 1272-1286 15 p.

Research output: Contribution to journalArticle

Chloroplasts
X-ray diffraction
X-Ray Diffraction
lasers
X-radiation
6 Citations (Scopus)

Cryogenic coherent x-ray diffraction imaging for biological non-crystalline particles using the KOTOBUKI-1 diffraction apparatus at SACLA

Oroguchi, T., Sekiguchi, Y., Kobayashi, A., Masaki, Y., Fukuda, A., Hashimoto, S., Nakasako, M., Ichikawa, Y., Kurumizaka, H., Shimizu, M., Inui, Y., Matsunaga, S., Kato, T., Namba, K., Yamaguchi, K., Kuwata, K., Kameda, H., Fukui, N., Kawata, Y., Kameshima, T. & 3 others, Takayama, Y., Yonekura, K. & Yamamoto, M., 2015 Jul 29, In : Journal of Physics B: Atomic, Molecular and Optical Physics. 48, 18

Research output: Contribution to journalArticle

cryogenics
x ray diffraction
diffraction
x ray lasers
cryogenic temperature
13 Citations (Scopus)

Signal enhancement and Patterson-search phasing for high-spatial-resolution coherent X-ray diffraction imaging of biological objects

Takayama, Y., Maki-Yonekura, S., Oroguchi, T., Nakasako, M. & Yonekura, K., 2015 Jan 28, In : Scientific Reports. 5, 8074.

Research output: Contribution to journalArticle

Gold Colloid
Computer-Assisted Image Processing
Signal-To-Noise Ratio
X-Ray Diffraction
Gold
44 Citations (Scopus)

Structure of a thermophilic F<inf>1</inf>-ATPase inhibited by an ε-subunit: Deeper insight into the ε-inhibition mechanism

Shirakihara, Y., Shiratori, A., Tanikawa, H., Nakasako, M., Yoshida, M. & Suzuki, T., 2015 Aug 1, In : FEBS Journal. 282, 15, p. 2895-2913 19 p.

Research output: Contribution to journalArticle

Proton-Translocating ATPases
Conformations
Databases
Escherichia coli
Catalytic Domain
2014
10 Citations (Scopus)

Dark-field phase retrieval under the constraint of the Friedel symmetry in coherent X-ray diffraction imaging

Kobayashi, A., Sekiguchi, Y., Takayama, Y., Oroguchi, T. & Nakasako, M., 2014 Nov 17, In : Optics Express. 22, 23, p. 27892-27909 18 p.

Research output: Contribution to journalArticle

retrieval
diffraction patterns
symmetry
diffraction
x rays
24 Citations (Scopus)

Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA

Sekiguchi, Y., Oroguchi, T., Takayama, Y. & Nakasako, M., 2014, In : Journal of Synchrotron Radiation. 21, 3, p. 600-612 13 p.

Research output: Contribution to journalArticle

X ray lasers
Free electron lasers
free electron lasers
Diffraction patterns
diffraction patterns

Erratum: Coherent diffraction imaging analysis of shape-controlled nanoparticles with focused hard X-ray free-electron laser pulses (Nano Letters (2013) 13:12 (6028-6032) DOI: 10.1021/nl403247x)

Takahashi, Y., Suzuki, A., Zettsu, N., Oroguchi, T., Takayama, Y., Sekiguchi, Y., Kobayashi, A., Yamamoto, M. & Nakasako, M., 2014 Apr 9, In : Nano Letters. 14, 4, p. 2231 1 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

IDATEN and G-SITENNO: GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA

Sekiguchi, Y., Yamamoto, M., Oroguchi, T., Takayama, Y., Suzuki, S. & Nakasako, M., 2014 Nov 1, In : Journal of Synchrotron Radiation. 21, 6, p. 1378-1383 6 p.

Research output: Contribution to journalArticle

graphical user interface
Free electron lasers
Graphical user interfaces
free electron lasers
Diffraction
24 Citations (Scopus)

Light-induced conformational changes of LOV1 (light oxygen voltage-sensing domain 1) and LOV2 relative to the kinase domain and regulation of kinase activity in Chlamydomonas phototropin

Okajima, K., Aihara, Y., Takayama, Y., Nakajima, M., Kashojiya, S., Hikima, T., Oroguchi, T., Kobayashi, A., Sekiguchi, Y., Yamamoto, M., Suzuki, T., Nagatani, A., Nakasako, M. & Tokutomi, S., 2014 Jan 3, In : Journal of Biological Chemistry. 289, 1, p. 413-422 10 p.

Research output: Contribution to journalArticle

Phototropins
Chlamydomonas
Phosphotransferases
Oxygen
Light
60 Citations (Scopus)

Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses

Xu, R., Jiang, H., Song, C., Rodriguez, J. A., Huang, Z., Chen, C. C., Nam, D., Park, J., Gallagher-Jones, M., Kim, S., Kim, S., Suzuki, A., Takayama, Y., Oroguchi, T., Takahashi, Y., Fan, J., Zou, Y., Hatsui, T., Inubushi, Y., Kameshima, T. & 9 others, Yonekura, K., Tono, K., Togashi, T., Sato, T., Yamamoto, M., Nakasako, M., Yabashi, M., Ishikawa, T. & Miao, J., 2014 Jun 5, In : Nature Communications. 5, 4061.

Research output: Contribution to journalArticle

X ray lasers
Free electron lasers
free electron lasers
Nanoparticles
Nanocrystals
2013
3 Citations (Scopus)
Hydration
Distribution functions
hydration
distribution functions
proteins
41 Citations (Scopus)

Coherent diffraction imaging analysis of shape-controlled nanoparticles with focused hard X-ray free-electron laser pulses

Takahashi, Y., Suzuki, A., Zettsu, N., Oroguchi, T., Takayama, Y., Sekiguchi, Y., Kobayashi, A., Yamamoto, M. & Nakasako, M., 2013 Dec 11, In : Nano Letters. 13, 12, p. 6028-6032 5 p.

Research output: Contribution to journalArticle

X ray lasers
Free electron lasers
free electron lasers
Diffraction patterns
Laser pulses
32 Citations (Scopus)

KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging

Nakasako, M., Takayama, Y., Oroguchi, T., Sekiguchi, Y., Kobayashi, A., Shirahama, K., Yamamoto, M., Hikima, T., Yonekura, K., Maki-Yonekura, S., Kohmura, Y., Inubushi, Y., Takahashi, Y., Suzuki, A., Matsunaga, S., Inui, Y., Tono, K., Kameshima, T., Joti, Y. & Hoshi, T., 2013 Sep, In : Review of Scientific Instruments. 84, 9, 093705.

Research output: Contribution to journalArticle

Liquid nitrogen
X-Ray Diffraction
Cryogenics
cryogenics
Nitrogen
28 Citations (Scopus)
X-ray Laser
Free Electron Laser
Biomolecules
x ray lasers
free electron lasers
2012
21 Citations (Scopus)
Humidity
Cryogenics
cryogenics
humidity
Microscopy
2011
7 Citations (Scopus)
Egg White
Muramidase
Humidity
Atmospheric humidity
Crystals
25 Citations (Scopus)
Three-dimensional Reconstruction
Image Reconstruction
Structural Analysis
image reconstruction
macromolecules
18 Citations (Scopus)

Light-induced movement of the LOV2 domain in an Asp720Asn mutant LOV2-kinase fragment of arabidopsis phototropin 2

Takayama, Y., Nakasako, M., Okajima, K., Iwata, A., Kashojiya, S., Matsui, Y. & Tokutomi, S., 2011 Feb 22, In : Biochemistry. 50, 7, p. 1174-1183 10 p.

Research output: Contribution to journalArticle

Phototropins
Arabidopsis
Phosphotransferases
Light
Scattering
1 Citation (Scopus)

New monoclinic form of bovine pancreatic ribonuclease A from a salt solution and comparison of intermolecular interactions in ribonucleases A

Takusagawa, H., Yamamura, S., Endo, S., Sugawara, Y., Inagaki, T. & Nakasako, M., 2011 Mar 15, In : Journal of Crystal Growth. 319, 1, p. 49-56 8 p.

Research output: Contribution to journalArticle

Pancreatic Ribonuclease
Dimers
Salts
dimers
salts
2010
8 Citations (Scopus)
Hydration
Distribution functions
hydration
Membrane Proteins
distribution functions
47 Citations (Scopus)

Redox-dependent domain rearrangement of protein disulfide isomerase coupled with exposure of its substrate-binding hydrophobic surface

Serve, O., Kamiya, Y., Maeno, A., Nakano, M., Murakami, C., Sasakawa, H., Yamaguchi, Y., Harada, T., Kurimoto, E., Yagi-Utsumi, M., Iguchi, T., Inaba, K., Kikuchi, J., Asami, O., Kajino, T., Oka, T., Nakasako, M. & Kato, K., 2010 Feb, In : Journal of Molecular Biology. 396, 2, p. 361-374 14 p.

Research output: Contribution to journalArticle

Protein Disulfide-Isomerases
Disulfides
Oxidation-Reduction
Catalytic Domain
Magnetic Resonance Spectroscopy
20 Citations (Scopus)

Redox-dependent domain rearrangement of protein disulfide isomerase from a thermophilic fungus

Nakasako, M., Maeno, A., Kurimoto, E., Harada, T., Yamaguchi, Y., Oka, T., Takayama, Y., Iwata, A. & Kato, K., 2010 Aug 17, In : Biochemistry. 49, 32, p. 6953-6962 10 p.

Research output: Contribution to journalArticle

Protein Disulfide-Isomerases
Fungi
Oxidation-Reduction
X ray scattering
Catalytic Domain
21 Citations (Scopus)
Enantioselectivity
Structural analysis
Catalytic Domain
Ligands
Enzymes
2009
29 Citations (Scopus)

Probability distributions of hydration water molecules around polar protein atoms obtained by a database analysis

Matsuoka, D. & Nakasako, M., 2009 Aug 13, In : Journal of Physical Chemistry B. 113, 32, p. 11274-11292 19 p.

Research output: Contribution to journalArticle

Hydration
Probability distributions
hydration
proteins
Proteins
2008
1 Citation (Scopus)

Crystallization and preliminary X-ray diffraction anaylsis of the LOV1 domains of phototropin 1 and 2 from Arabidopsis thaliana

Nakasako, M., Hirata, M., Shimizu, N., Hosokawa, S., Matsuoka, D., Oka, T., Yamamoto, M. & Tokutomi, S., 2008, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 64, 7, p. 617-621 5 p.

Research output: Contribution to journalArticle

Phototropins
Crystallization
Arabidopsis
X-Ray Diffraction
crystallization
2 Citations (Scopus)
Alcaligenes
Crystallization
X-Ray Diffraction
enzymes
crystallization
79 Citations (Scopus)

Structural Basis of the LOV1 Dimerization of Arabidopsis Phototropins 1 and 2

Nakasako, M., Zikihara, K., Matsuoka, D., Katsura, H. & Tokutomi, S., 2008 Sep 5, In : Journal of Molecular Biology. 381, 3, p. 718-733 16 p.

Research output: Contribution to journalArticle

Dimerization
Light
Phototropins
Oxygen
Flavin Mononucleotide
2007
14 Citations (Scopus)

Crystal structures of blasticidin S deaminase (BSD): Implications for dynamic properties of catalytic zinc

Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Teh, A. H., Kimura, M., Yamaguchi, I. & Ueki, T., 2007 Dec 21, In : Journal of Biological Chemistry. 282, 51, p. 37103-37111 9 p.

Research output: Contribution to journalArticle

blasticidin S deaminase
Zinc
Crystal structure
Cytidine Deaminase
Substrates
2006
13 Citations (Scopus)

A fluorescent antibiotic resistance marker for rapid production of transgenic rice plants

Ochiai-Fukuda, T., Takahashi-Ando, N., Ohsato, S., Igawa, T., Kadokura, K., Hamamoto, H., Nakasako, M., Kudo, T., Shibata, T., Yamaguchi, I. & Kimura, M., 2006 Apr 20, In : Journal of Biotechnology. 122, 4, p. 521-527 7 p.

Research output: Contribution to journalArticle

blasticidin S deaminase
Genetically Modified Plants
Antibiotics
Microbial Drug Resistance
Genes
2 Citations (Scopus)

Resistance buster compounds for MBI-D insensitive rice blast fungus - Inquiry on effective compounds among derivatives of MBI-D fungicides

Kurahashi, Y., Kagabu, S., Yamada, N., Mitsugi, Y., Shimizu, M., Nakasako, M. & Yamaguchi, I., 2006, In : Journal of Pesticide Science. 31, 2, p. 85-94 10 p.

Research output: Contribution to journalArticle

phenethylamines
blast disease
Amines
fungicides
Fungi
2005
8 Citations (Scopus)

Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten

Nakasako, M., Oka, T., Mashumo, M., Takahashi, H., Shimada, I., Yamaguchi, Y., Kato, K. & Arata, Y., 2005 Aug 19, In : Journal of Molecular Biology. 351, 3, p. 627-640 14 p.

Research output: Contribution to journalArticle

Immunoglobulin Variable Region
Complementarity Determining Regions
Haptens
Lysine
Fluorescence
19 Citations (Scopus)

Hydrogen-bond patterns in the hydration structure of a protein

Yokomizo, T., Nakasako, M., Yamazaki, T., Shindo, H. & Higo, J., 2005 Jan 11, In : Chemical Physics Letters. 401, 4-6, p. 332-336 5 p.

Research output: Contribution to journalArticle

Hydration
hydration
Hydrogen bonds
hydrogen bonds
proteins
9 Citations (Scopus)

Light-induced global structural changes in phytochrome A regulating photomorphogenesis in plants

Nakasako, M., Iwata, T., Inoue, K. & Tokutomi, S., 2005 Jan, In : FEBS Journal. 272, 2, p. 603-612 10 p.

Research output: Contribution to journalArticle

Phytochrome A
Light
Molecular Structure
Phytochrome
Molecular structure
24 Citations (Scopus)

Patterns and networks of hydrogen-bonds in the hydration structure of human lysozyme

Yokomizo, T., Higo, J. & Nakasako, M., 2005 Jul 10, In : Chemical Physics Letters. 410, 1-3, p. 31-35 5 p.

Research output: Contribution to journalArticle

lysozyme
Muramidase
Hydration
hydration
Hydrogen bonds