• 392 Citations
  • 9 h-Index
20082021

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

  • 392 Citations
  • 9 h-Index
  • 20 Conference contribution
  • 17 Article
  • 3 Conference article
Article

Analysing diffusion and flow-driven instability using semidefinite programming

Hori, Y. & Miyazako, H., 2019 Jan 1, In : Journal of the Royal Society Interface. 16, 150, 20180586.

Research output: Contribution to journalArticle

1 Citation (Scopus)

A population-based temporal logic gate for timing and recording chemical events

Hsiao, V., Hori, Y., Rothemund, P. W. & Murray, R. M., 2016 May 1, In : Molecular systems biology. 12, 5, 12.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Biochemical oscillations in delayed negative cyclic feedback: Existence and profiles

Hori, Y., Takada, M. & Hara, S., 2013 Sep 1, In : Automatica. 49, 9, p. 2581-2590 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Bounding transient moments of stochastic chemical reactions

Sakurai, Y. & Hori, Y., 2019 Apr 1, In : IEEE Control Systems Letters. 3, 2, p. 290-295 6 p., 8462752.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Cell-free extract based optimization of biomolecular circuits with droplet microfluidics

Hori, Y., Kantak, C., Murray, R. M. & Abate, A. R., 2017 Sep 21, In : Lab on a Chip. 17, 18, p. 3037-3042 6 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Collective Oscillation Period of Inter-Coupled Biological Negative Cyclic Feedback Oscillators

Wang, Y., Hori, Y., Hara, S. & Doyle, F. J., 2015 May 1, In : IEEE Transactions on Automatic Control. 60, 5, p. 1392-1397 6 p., 6862832.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Comments and Corrections on 'Stability of Genetic Regulatory Networks with Time Delay'

Takada, M., Hori, Y. & Hara, S., 2014 Sep 1, In : IEEE Transactions on Circuits and Systems I: Regular Papers. 61, 9, p. 2771-2774 4 p., 6851213.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Cooperative control of multi-agent dynamical systems in target-enclosing operations using cyclic pursuit strategy

Kim, T. H., Hara, S. & Hori, Y., 2010 Oct 1, In : International Journal of Control. 83, 10, p. 2040-2052 13 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Coordinated Spatial Pattern Formation in Biomolecular Communication Networks

Hori, Y., Miyazako, H., Kumagai, S. & Hara, S., 2015 Jun, In : IEEE Transactions on Molecular, Biological, and Multi-Scale Communications. 1, 2, p. 111-121 11 p., 7328285.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Existence criteria of periodic oscillations in cyclic gene regulatory networks

Hori, Y., Kim, T. H. & Hara, S., 2011 Jun 1, In : Automatica. 47, 6, p. 1203-1209 7 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)

Finite-Time Stability Analysis for Resource Limited Chemical Reactions

Matsunaga, T., Uemura, R. & Hori, Y., 2021 Jul, In : IEEE Control Systems Letters. 5, 3, p. 815-820 6 p., 9129836.

Research output: Contribution to journalArticle

Intercellular delay regulates the collective period of repressively coupled gene regulatory oscillator networks

Wang, Y., Hori, Y., Hara, S. & Doyle, F. J., 2014 Jan, In : IEEE Transactions on Automatic Control. 59, 1, p. 211-216 6 p., 6544203.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Modeling and Analysis of Stochastic Reaction Kinetics in Biomolecular Systems

Hori, Y., 2020 Jan 1, (Accepted/In press) In : New Generation Computing.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Optimization-based synthesis of stochastic biocircuits with statistical specifications

Sakurai, Y. & Hori, Y., 2018 Jan 1, In : Journal of the Royal Society Interface. 15, 138, 20170709.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Rapid cell-free forward engineering of novel genetic ring oscillators

Niederholtmeyer, H., Sun, Z. Z., Hori, Y., Yeung, E., Verpoorte, A., Murray, R. M. & Maerkl, S. J., 2015 Oct 2, In : eLife. 4, OCTOBER2015, e09771.

Research output: Contribution to journalArticle

97 Citations (Scopus)

Robust stability analysis for LTI systems with generalized frequency variables and its application to gene regulatory networks

Hara, S., Iwasaki, T. & Hori, Y., 2019 Jul 1, In : Automatica. 105, p. 96-106 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Robust stability analysis of geneprotein regulatory networks with cyclic activationrepression interconnections

Kim, T. H., Hori, Y. & Hara, S., 2011 Jun, In : Systems and Control Letters. 60, 6, p. 373-382 10 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
Conference article

Disturbance response analysis of cell-to-cell communication systems based on spatial frequency decomposition

Kotsuka, T. & Hori, Y., 2019 Jan 1, In : IFAC-PapersOnLine. 52, 26, p. 65-69 5 p.

Research output: Contribution to journalConference article

Open Access

Noise-induced spatial pattern formation in stochastic reaction-diffusion systems

Hori, Y. & Hara, S., 2012 Dec 1, In : Proceedings of the IEEE Conference on Decision and Control. p. 1053-1058 6 p., 6426152.

Research output: Contribution to journalConference article

8 Citations (Scopus)

The collective oscillation period of inter-coupled Goodwin oscillators

Wang, Y., Hori, Y., Hara, S. & Doyle, F. J., 2012 Dec 1, In : Proceedings of the IEEE Conference on Decision and Control. p. 1627-1632 6 p., 6426590.

Research output: Contribution to journalConference article

7 Citations (Scopus)
Conference contribution

A convex approach to steady state moment analysis for stochastic chemical reactions

Sakurai, Y. & Hori, Y., 2018 Jan 18, 2017 IEEE 56th Annual Conference on Decision and Control, CDC 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 1206-1211 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Citations (Scopus)

A state-space realization approach to set identification of biochemical kinetic parameters

Hori, Y. & Murray, R. M., 2015 Nov 16, 2015 European Control Conference, ECC 2015. Institute of Electrical and Electronics Engineers Inc., p. 2280-2285 6 p. 7330878. (2015 European Control Conference, ECC 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Distributed formation control for target-enclosing operations based on a cyclic pursuit strategy

Hara, S., Kim, T. H. & Hori, Y., 2008 Dec 1, Proceedings of the 17th World Congress, International Federation of Automatic Control, IFAC. 1 PART 1 ed. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 17, no. 1 PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

33 Citations (Scopus)

Efficient parameter identification for stochastic biochemical networks using a reduced-order realization

Hori, Y., Khammash, M. H. & Hara, S., 2013 Dec 1, 2013 European Control Conference, ECC 2013. p. 4154-4159 6 p. 6669455. (2013 European Control Conference, ECC 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Citations (Scopus)

Engineering principles of synthetic biochemical oscillators with negative cyclic feedback

Hori, Y. & Murray, R. M., 2015 Feb 8, 54rd IEEE Conference on Decision and Control,CDC 2015. Institute of Electrical and Electronics Engineers Inc., p. 584-589 6 p. 7402292. (Proceedings of the IEEE Conference on Decision and Control; vol. 54rd IEEE Conference on Decision and Control,CDC 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Estimation of tibialis anterior muscle stiffness during the swing phase of walking with various footwear

Uchiyama, T., Hori, Y. & Suzuki, K., 2017 Sep 13, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4131-4134 4 p. 8037765

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Existence conditions for oscillations in cyclic gene regulatory networks with time delay

Takada, M., Hori, Y. & Hara, S., 2010 Dec 1, 2010 IEEE International Conference on Control Applications, CCA 2010. p. 830-835 6 p. 5611130. (Proceedings of the IEEE International Conference on Control Applications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Graphical and analytic criteria for the existence of protein level oscillations in cyclic gene regulatory networks

Hori, Y., Kim, T. H. & Hara, S., 2009 Dec 1, Proceedings of the 48th IEEE Conference on Decision and Control held jointly with 2009 28th Chinese Control Conference, CDC/CCC 2009. p. 3521-3526 6 p. 5400718. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Citations (Scopus)

Locally Bendable Stimuli-Responsive Hydrogel Actuator with Axially Patterned Functional Materials

Takeuchi, N., Nakajima, S., Kawano, R., Hori, Y. & Onoe, H., 2020 Jan, 33rd IEEE International Conference on Micro Electro Mechanical Systems, MEMS 2020. Institute of Electrical and Electronics Engineers Inc., p. 243-244 2 p. 9056321. (Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS); vol. 2020-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Local stability analysis for a class of quorum-sensing networks with cyclic gene regulatory networks

Nakamura, T., Hara, S. & Hori, Y., 2011 Jan 1, SICE 2011 - SICE Annual Conference 2011, Final Program and Abstracts. Society of Instrument and Control Engineers (SICE), p. 2111-2116 6 p. 6060320. (Proceedings of the SICE Annual Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Model-based feedback control of synthetic biomolecular circuits

Hori, Y., 2018 Feb 28, MHS 2017 - 28th 2017 International Symposium on Micro-NanoMechatronics and Human Science. Institute of Electrical and Electronics Engineers Inc., p. 1-2 2 p. (MHS 2017 - 28th 2017 International Symposium on Micro-NanoMechatronics and Human Science; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On the existence of oscillatory behavior in gene regulatory networks with cyclic interconnections

Hori, Y., Takabe, A. & Hara, S., 2009 Dec 1, ICCAS-SICE 2009 - ICROS-SICE International Joint Conference 2009, Proceedings. p. 2525-2530 6 p. 5335339. (ICCAS-SICE 2009 - ICROS-SICE International Joint Conference 2009, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Oscillation pattern analysis for gene regulatory networks with negative cyclic feedback

Hori, Y. & Hara, S., 2010 Dec 1, 2010 49th IEEE Conference on Decision and Control, CDC 2010. p. 5798-5803 6 p. 5717982. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Periodic oscillations in cyclic repressor networks: Analytic existence criteria with biological insight

Hori, Y., Hara, S. & Kim, T. H., 2010 Dec 1, 2010 IEEE International Conference on Control Applications, CCA 2010. p. 824-829 6 p. 5611167. (Proceedings of the IEEE International Conference on Control Applications).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Robust stability analysis for cyclic gene regulatory networks with uncertainty

Osawa, S., Hori, Y. & Hara, S., 2011 Aug 29, ASCC 2011 - 8th Asian Control Conference - Final Program and Proceedings. p. 869-874 6 p. 5899186. (ASCC 2011 - 8th Asian Control Conference - Final Program and Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Robust stability analysis of gene-protein regulatory networks with cyclic activation-inhibition interconnections

Hori, Y., Kim, T. H. & Hara, S., 2009 Dec 11, Proceedings of 2009 7th Asian Control Conference, ASCC 2009. p. 1334-1339 6 p. 5276127. (Proceedings of 2009 7th Asian Control Conference, ASCC 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Semidefinite programming for Turing instability analysis in molecular communication networks

Hori, Y. & Miyazako, H., 2019 Dec, 2019 IEEE 58th Conference on Decision and Control, CDC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1874-1880 7 p. 9029976. (Proceedings of the IEEE Conference on Decision and Control; vol. 2019-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Time delay effects on oscillation profiles in cyclic gene regulatory networks: Harmonic balance approach

Hori, Y. & Hara, S., 2011, Proceedings of the 2011 American Control Conference, ACC 2011. Institute of Electrical and Electronics Engineers Inc., p. 2891-2896 6 p. 5990877. (Proceedings of the American Control Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Citations (Scopus)

Time evolution of microenvironment around cells regulated by the secretion activity and culture density of the cells

Yamagishi, M., Hori, Y., Uemura, S., Ohara, O. & Shirasaki, Y., 2018 Feb 28, MHS 2017 - 28th 2017 International Symposium on Micro-NanoMechatronics and Human Science. Institute of Electrical and Electronics Engineers Inc., p. 1-5 5 p. (MHS 2017 - 28th 2017 International Symposium on Micro-NanoMechatronics and Human Science; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Turing instability in reaction-diffusion systems with a single diffuser: Characterization based on root locus

Miyazako, H., Hori, Y. & Hara, S., 2013 Jan 1, 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013. Institute of Electrical and Electronics Engineers Inc., p. 2671-2676 6 p. 6760286. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Citations (Scopus)