A comprehensive software suite for the analysis of cDNAs

Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

Original languageEnglish
Pages (from-to)179-188
Number of pages10
JournalGenomics, Proteomics and Bioinformatics
Volume3
Issue number3
Publication statusPublished - 2005 Aug

Fingerprint

CDNA
Software
Complementary DNA
Proteins
Protein
Bioinformatics
Metabolic Networks and Pathways
Computational Biology
Codon
Termination
Comparative Study
Statistical Analysis
Amino Acids
Amino acids
Pathway
Statistical methods
Genes
Gene
Prediction
Alternatives

Keywords

  • Bioinformatics
  • cDNA
  • Software

ASJC Scopus subject areas

  • Genetics
  • Biochemistry
  • Molecular Biology

Cite this

A comprehensive software suite for the analysis of cDNAs. / Arakawa, Kazuharu; Suzuki, Haruo; Fujishima, Kosuke; Fujimoto, Kenji; Ueda, Sho; Matsui, Motomu; Tomita, Masaru.

In: Genomics, Proteomics and Bioinformatics, Vol. 3, No. 3, 08.2005, p. 179-188.

Research output: Contribution to journalArticle

Arakawa, K, Suzuki, H, Fujishima, K, Fujimoto, K, Ueda, S, Matsui, M & Tomita, M 2005, 'A comprehensive software suite for the analysis of cDNAs', Genomics, Proteomics and Bioinformatics, vol. 3, no. 3, pp. 179-188.
Arakawa K, Suzuki H, Fujishima K, Fujimoto K, Ueda S, Matsui M et al. A comprehensive software suite for the analysis of cDNAs. Genomics, Proteomics and Bioinformatics. 2005 Aug;3(3):179-188.
Arakawa, Kazuharu ; Suzuki, Haruo ; Fujishima, Kosuke ; Fujimoto, Kenji ; Ueda, Sho ; Matsui, Motomu ; Tomita, Masaru. / A comprehensive software suite for the analysis of cDNAs. In: Genomics, Proteomics and Bioinformatics. 2005 ; Vol. 3, No. 3. pp. 179-188.
@article{cc5b3e309bd64657b452018b51444622,
title = "A comprehensive software suite for the analysis of cDNAs",
abstract = "We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.",
keywords = "Bioinformatics, cDNA, Software",
author = "Kazuharu Arakawa and Haruo Suzuki and Kosuke Fujishima and Kenji Fujimoto and Sho Ueda and Motomu Matsui and Masaru Tomita",
year = "2005",
month = "8",
language = "English",
volume = "3",
pages = "179--188",
journal = "Genomics Proteomics Bioinformatics",
issn = "1672-0229",
publisher = "Beijing Genomics Institute",
number = "3",

}

TY - JOUR

T1 - A comprehensive software suite for the analysis of cDNAs

AU - Arakawa, Kazuharu

AU - Suzuki, Haruo

AU - Fujishima, Kosuke

AU - Fujimoto, Kenji

AU - Ueda, Sho

AU - Matsui, Motomu

AU - Tomita, Masaru

PY - 2005/8

Y1 - 2005/8

N2 - We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

AB - We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

KW - Bioinformatics

KW - cDNA

KW - Software

UR - http://www.scopus.com/inward/record.url?scp=33645122070&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=33645122070&partnerID=8YFLogxK

M3 - Article

C2 - 16487083

AN - SCOPUS:33645122070

VL - 3

SP - 179

EP - 188

JO - Genomics Proteomics Bioinformatics

JF - Genomics Proteomics Bioinformatics

SN - 1672-0229

IS - 3

ER -