A gridified protein structure prediction system 'Rokky-G' and its implementation issues

Shingo Masuda, Minoru Ikebe, Kazutoshi Fujikawa, Hideki Sunahara

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

In recent years, simulation using computer systems has been of increasing importance in the life sciences. We have developed a system called 'Rokky-G' that facilitates a protein structure prediction strategy called 'Rokky' on Grid systems. Rokky-G provides the framework of protein structure prediction on the Grid. In this paper we discuss the architecture of Rokky-G and implementation issues identified in order to obtain highly reliable results.

Original languageEnglish
Title of host publicationStudies in Health Technology and Informatics
Pages158-166
Number of pages9
Volume120
Publication statusPublished - 2006
Externally publishedYes

Fingerprint

Proteins
Biological Science Disciplines
Computer Systems
Computer systems

Keywords

  • Grid Computing
  • Job Priority
  • Protein structure prediction
  • Resource allocation
  • Trial-and-error

ASJC Scopus subject areas

  • Biomedical Engineering
  • Health Informatics
  • Health Information Management

Cite this

Masuda, S., Ikebe, M., Fujikawa, K., & Sunahara, H. (2006). A gridified protein structure prediction system 'Rokky-G' and its implementation issues. In Studies in Health Technology and Informatics (Vol. 120, pp. 158-166)

A gridified protein structure prediction system 'Rokky-G' and its implementation issues. / Masuda, Shingo; Ikebe, Minoru; Fujikawa, Kazutoshi; Sunahara, Hideki.

Studies in Health Technology and Informatics. Vol. 120 2006. p. 158-166.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Masuda, S, Ikebe, M, Fujikawa, K & Sunahara, H 2006, A gridified protein structure prediction system 'Rokky-G' and its implementation issues. in Studies in Health Technology and Informatics. vol. 120, pp. 158-166.
Masuda S, Ikebe M, Fujikawa K, Sunahara H. A gridified protein structure prediction system 'Rokky-G' and its implementation issues. In Studies in Health Technology and Informatics. Vol. 120. 2006. p. 158-166
Masuda, Shingo ; Ikebe, Minoru ; Fujikawa, Kazutoshi ; Sunahara, Hideki. / A gridified protein structure prediction system 'Rokky-G' and its implementation issues. Studies in Health Technology and Informatics. Vol. 120 2006. pp. 158-166
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