A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae

Takayuki Fujiwara, Yu Kanesaki, Shunsuke Hirooka, Atsuko Era, Nobuko Sumiya, Hirofumi Yoshikawa, Kan Tanaka, Shin Ya Miyagishima

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

The unicellular red alga Cyanidioschyzon merolae is a model organism for studying the basic biology of photosynthetic organisms. The C. merolae cell is composed of an extremely simple set of organelles. The genome is completely sequenced. Gene targeting and a heat-shock inducible gene expression system has been recently established. However, a conditional gene knockdown system has not been established, which is required for the examination of function of genes that are essential to cell viability and primary mutant defects. In the current study, we first evaluated the expression of a transgene from two chromosomal neutral loci located in the intergenic region between CMD184C and CMD185C, and a region upstream of the URA5.3 gene. There was no significant difference in expression between them and this result suggests that both may be used as neutral loci. We then designed an inducible and repressible gene expression by using promoters of nitrate-assimilation genes. The expression of nitrate-assimilation genes such as NR (nitrate reductase), NIR (nitrite reductase), and NRT (the nitrate/nitrite transporter) are reversibly regulated by their dependence on nitrogen sources. We constructed stable strains in which a cassette containing the NR, NIR, or NRT promoter and sfGFP gene was inserted in a region upstream of URA5.3 and examined the efficacy of the promoters. The NR, NIR, and NRT promoters were constitutively activated in the nitrate medium, whereas their activities were extremely low in presence of ammonium. The activation of each promoter was immediately inhibited within a period of 1 h by the addition of ammonium. Thus, a conditional knockdown system in C. merolae was successfully established. The activity varies among the promoters, and each is selectable according to the expression level of a target gene estimated by RNA-sequencing. This method is applicable to defects in genes of interest in photosynthetic organism.

Original languageEnglish
Article numberA657
JournalFrontiers in Plant Science
Volume6
Issue numberAUG
DOIs
Publication statusPublished - 2015 Aug 26
Externally publishedYes

Fingerprint

Rhodophyta
gene expression
promoter regions
nitrates
nitrogen
nitrite reductase
genes
nitrate reductase
nitrites
transporters
autotrophs
assimilation (physiology)
loci
gene targeting
intergenic DNA
transgenes
cell viability
organelles
heat stress
sequence analysis

Keywords

  • Algae
  • Conditional knockdown
  • Gene inducible system
  • Homologous recombination
  • Plants

ASJC Scopus subject areas

  • Plant Science

Cite this

A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. / Fujiwara, Takayuki; Kanesaki, Yu; Hirooka, Shunsuke; Era, Atsuko; Sumiya, Nobuko; Yoshikawa, Hirofumi; Tanaka, Kan; Miyagishima, Shin Ya.

In: Frontiers in Plant Science, Vol. 6, No. AUG, A657, 26.08.2015.

Research output: Contribution to journalArticle

Fujiwara, Takayuki ; Kanesaki, Yu ; Hirooka, Shunsuke ; Era, Atsuko ; Sumiya, Nobuko ; Yoshikawa, Hirofumi ; Tanaka, Kan ; Miyagishima, Shin Ya. / A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. In: Frontiers in Plant Science. 2015 ; Vol. 6, No. AUG.
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