A trend of central versus peripheral structuring in mitochondrial and nuclear gene sequences of the Japanese wood mouse, Apodemus speciosus

Morihiko Tomozawa, Hitoshi Suzuki

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

A phylogeographic analysis was performed on Japanese endemic wood mice (Apodemus speciosus) using nuclear interphotoreceptor retinol binding protein (IRBP) gene sequences (1,152 bp), together with previously published mitochondrial cytochrome b (cyt Jb) data. In the IRBP analysis, 40 haplotypes were recovered from 84 individuals by statistical and subcloning methods. Substantial sequence variation was determined from the IRBP data (π=0.0047), and no significant evidence of recombination was detected. From the phylogenetic analysis, the 40 haplotypes fell into two major groups with geographic associations, irrespective of the karyotype groups (2n=46 and 2n=48), yielding a trend of central (Hokkaido, Honshu, Shikoku, Kyushu, and Sado) and peripheral (Izu, Oki, Tsushima, and Satsunan Is.) groupings. This geographic pattern is similar to that observed in the cyt b data, with a different insular grouping of Sado, Hokkaido, Izu, and Satsunan islands, and also to that of morphological features. In both gene data sets, nested clade analyses revealed allopatric fragmentation in the "peripheral island clades" and range expansion in the "central island clades." A mismatch analysis using cyt b data also suggested expansion of the central islands clade. Thus, the trend of central vs. peripheral structuring may be attributable to past demographic dynamics in the two distinct haplotype clades, such as range expansion of one clade in the central area of the Japanese Islands, leaving the other clade in the periphery.

Original languageEnglish
Pages (from-to)273-285
Number of pages13
JournalZoological Science
Volume25
Issue number3
DOIs
Publication statusPublished - 2008 Mar

Fingerprint

Apodemus speciosus
Apodemus
retinol-binding protein
Japan
nucleotide sequences
haplotypes
nuclear proteins
cytochrome b
karyotyping
demographic statistics
phylogeny
genes

Keywords

  • Apodemus speciosus
  • Central vs. peripheral structure
  • Geographic isolation
  • Japanese archipelago
  • Mitochondrial gene
  • Nuclear gene
  • Phylogeography
  • Population genetics

ASJC Scopus subject areas

  • Animal Science and Zoology

Cite this

A trend of central versus peripheral structuring in mitochondrial and nuclear gene sequences of the Japanese wood mouse, Apodemus speciosus. / Tomozawa, Morihiko; Suzuki, Hitoshi.

In: Zoological Science, Vol. 25, No. 3, 03.2008, p. 273-285.

Research output: Contribution to journalArticle

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