A web server for interactive and zoomable Chaos Game Representation images

Research output: Contribution to journalArticlepeer-review

4 Citations (Scopus)

Abstract

Chaos Game Representation (CGR) is a generalized scale-independent Markov transition table, which is useful for the visualization and comparative study of genomic signature, or for the study of characteristic sequence motifs. However, in order to fully utilize the scale-independent properties of CGR, it should be accessible through scale-independent user interface instead of static images. Here we describe a web server and Perl library for generating zoomable CGR images utilizing Google Maps API, which is also easily searchable for specific motifs. The web server is freely accessible at http://www.g-language.org/wiki/cgr/, and the Perl library as well as the source code is distributed with the G-language Genome Analysis Environment under GNU General Public License.

Original languageEnglish
Article number1751
Pages (from-to)6
Number of pages1
JournalSource Code for Biology and Medicine
Volume4
DOIs
Publication statusPublished - 2009 Sep 17

ASJC Scopus subject areas

  • Information Systems
  • Computer Science Applications
  • Health Informatics
  • Information Systems and Management

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