Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients

Shigeki Mitsunaga, Kazuyoshi Hosomichi, Yuko Okudaira, Hirofumi Nakaoka, Yasuo Suzuki, Masataka Kuwana, Shinji Sato, Yuko Kaneko, Yasuhiko Homma, Akira Oka, Takashi Shiina, Hidetoshi Inoko, Ituro Inoue

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Exome sequencings were conducted using 59 patients having rheumatoid arthritis (RA) and 93 controls. After stepwise filtering, 107 genes showed less than 0.05 of P-values by gene-burden tests. Among 107 genes, NDUFA7 which is a subunit of the complex I in the mitochondrial respiratory chain was selected for further analysis based on previous reports. A case-control study was performed on the three single-nucleotide variants (SNVs) of NDUFA7 with 432 cases and 432 controls. An association was observed between NDUFA7 and RA with severe erosive arthritis. These results together with previous reports suggested the involvement of reactive oxygen species (ROS) in the pathogenesis of RA. In the next step, four SNVs from three genes related to the mitochondrial respiratory chain were selected, which is a major source of ROS, and conducted a case-control study. An association was observed based on a pathway-burden test comprising NDUFA7, SDHAF2, SCO1 and ATP5O: P=1.56E-04, odds ratio=2.16, 95% confidence interval=1.43-3.28. Previous reports suggested the involvement of ROS in the pathogenesis of RA. The aggregation of SNVs in the mitochondria respiratory chain suggests the pivotal role of those SNVs in the pathogenesis of RA with severe erosive arthritis.

Original languageEnglish
Pages (from-to)449-454
Number of pages6
JournalJournal of Human Genetics
Volume60
Issue number8
DOIs
Publication statusPublished - 2015 Aug 26

Fingerprint

Electron Transport
Rheumatoid Arthritis
Mitochondria
Nucleotides
Reactive Oxygen Species
Proteins
Genes
Arthritis
Case-Control Studies
Exome
Odds Ratio
Confidence Intervals

ASJC Scopus subject areas

  • Genetics(clinical)
  • Genetics

Cite this

Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients. / Mitsunaga, Shigeki; Hosomichi, Kazuyoshi; Okudaira, Yuko; Nakaoka, Hirofumi; Suzuki, Yasuo; Kuwana, Masataka; Sato, Shinji; Kaneko, Yuko; Homma, Yasuhiko; Oka, Akira; Shiina, Takashi; Inoko, Hidetoshi; Inoue, Ituro.

In: Journal of Human Genetics, Vol. 60, No. 8, 26.08.2015, p. 449-454.

Research output: Contribution to journalArticle

Mitsunaga, S, Hosomichi, K, Okudaira, Y, Nakaoka, H, Suzuki, Y, Kuwana, M, Sato, S, Kaneko, Y, Homma, Y, Oka, A, Shiina, T, Inoko, H & Inoue, I 2015, 'Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients', Journal of Human Genetics, vol. 60, no. 8, pp. 449-454. https://doi.org/10.1038/jhg.2015.50
Mitsunaga, Shigeki ; Hosomichi, Kazuyoshi ; Okudaira, Yuko ; Nakaoka, Hirofumi ; Suzuki, Yasuo ; Kuwana, Masataka ; Sato, Shinji ; Kaneko, Yuko ; Homma, Yasuhiko ; Oka, Akira ; Shiina, Takashi ; Inoko, Hidetoshi ; Inoue, Ituro. / Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients. In: Journal of Human Genetics. 2015 ; Vol. 60, No. 8. pp. 449-454.
@article{3de0271beef4451ba59c5ec406e83fbb,
title = "Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients",
abstract = "Exome sequencings were conducted using 59 patients having rheumatoid arthritis (RA) and 93 controls. After stepwise filtering, 107 genes showed less than 0.05 of P-values by gene-burden tests. Among 107 genes, NDUFA7 which is a subunit of the complex I in the mitochondrial respiratory chain was selected for further analysis based on previous reports. A case-control study was performed on the three single-nucleotide variants (SNVs) of NDUFA7 with 432 cases and 432 controls. An association was observed between NDUFA7 and RA with severe erosive arthritis. These results together with previous reports suggested the involvement of reactive oxygen species (ROS) in the pathogenesis of RA. In the next step, four SNVs from three genes related to the mitochondrial respiratory chain were selected, which is a major source of ROS, and conducted a case-control study. An association was observed based on a pathway-burden test comprising NDUFA7, SDHAF2, SCO1 and ATP5O: P=1.56E-04, odds ratio=2.16, 95{\%} confidence interval=1.43-3.28. Previous reports suggested the involvement of ROS in the pathogenesis of RA. The aggregation of SNVs in the mitochondria respiratory chain suggests the pivotal role of those SNVs in the pathogenesis of RA with severe erosive arthritis.",
author = "Shigeki Mitsunaga and Kazuyoshi Hosomichi and Yuko Okudaira and Hirofumi Nakaoka and Yasuo Suzuki and Masataka Kuwana and Shinji Sato and Yuko Kaneko and Yasuhiko Homma and Akira Oka and Takashi Shiina and Hidetoshi Inoko and Ituro Inoue",
year = "2015",
month = "8",
day = "26",
doi = "10.1038/jhg.2015.50",
language = "English",
volume = "60",
pages = "449--454",
journal = "Journal of Human Genetics",
issn = "1434-5161",
publisher = "Nature Publishing Group",
number = "8",

}

TY - JOUR

T1 - Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients

AU - Mitsunaga, Shigeki

AU - Hosomichi, Kazuyoshi

AU - Okudaira, Yuko

AU - Nakaoka, Hirofumi

AU - Suzuki, Yasuo

AU - Kuwana, Masataka

AU - Sato, Shinji

AU - Kaneko, Yuko

AU - Homma, Yasuhiko

AU - Oka, Akira

AU - Shiina, Takashi

AU - Inoko, Hidetoshi

AU - Inoue, Ituro

PY - 2015/8/26

Y1 - 2015/8/26

N2 - Exome sequencings were conducted using 59 patients having rheumatoid arthritis (RA) and 93 controls. After stepwise filtering, 107 genes showed less than 0.05 of P-values by gene-burden tests. Among 107 genes, NDUFA7 which is a subunit of the complex I in the mitochondrial respiratory chain was selected for further analysis based on previous reports. A case-control study was performed on the three single-nucleotide variants (SNVs) of NDUFA7 with 432 cases and 432 controls. An association was observed between NDUFA7 and RA with severe erosive arthritis. These results together with previous reports suggested the involvement of reactive oxygen species (ROS) in the pathogenesis of RA. In the next step, four SNVs from three genes related to the mitochondrial respiratory chain were selected, which is a major source of ROS, and conducted a case-control study. An association was observed based on a pathway-burden test comprising NDUFA7, SDHAF2, SCO1 and ATP5O: P=1.56E-04, odds ratio=2.16, 95% confidence interval=1.43-3.28. Previous reports suggested the involvement of ROS in the pathogenesis of RA. The aggregation of SNVs in the mitochondria respiratory chain suggests the pivotal role of those SNVs in the pathogenesis of RA with severe erosive arthritis.

AB - Exome sequencings were conducted using 59 patients having rheumatoid arthritis (RA) and 93 controls. After stepwise filtering, 107 genes showed less than 0.05 of P-values by gene-burden tests. Among 107 genes, NDUFA7 which is a subunit of the complex I in the mitochondrial respiratory chain was selected for further analysis based on previous reports. A case-control study was performed on the three single-nucleotide variants (SNVs) of NDUFA7 with 432 cases and 432 controls. An association was observed between NDUFA7 and RA with severe erosive arthritis. These results together with previous reports suggested the involvement of reactive oxygen species (ROS) in the pathogenesis of RA. In the next step, four SNVs from three genes related to the mitochondrial respiratory chain were selected, which is a major source of ROS, and conducted a case-control study. An association was observed based on a pathway-burden test comprising NDUFA7, SDHAF2, SCO1 and ATP5O: P=1.56E-04, odds ratio=2.16, 95% confidence interval=1.43-3.28. Previous reports suggested the involvement of ROS in the pathogenesis of RA. The aggregation of SNVs in the mitochondria respiratory chain suggests the pivotal role of those SNVs in the pathogenesis of RA with severe erosive arthritis.

UR - http://www.scopus.com/inward/record.url?scp=84940052038&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84940052038&partnerID=8YFLogxK

U2 - 10.1038/jhg.2015.50

DO - 10.1038/jhg.2015.50

M3 - Article

VL - 60

SP - 449

EP - 454

JO - Journal of Human Genetics

JF - Journal of Human Genetics

SN - 1434-5161

IS - 8

ER -