An inducible recA expression Bacillus subtilis genome vector for stable manipulation of large DNA fragments

Takafumi Ogawa, Tetsuo Iwata, Shinya Kaneko, Mitsuhiro Itaya, Junji Hirota

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

The Bacillus subtilis genome (BGM) vector is a novel cloning system based on the natural competence that enables B. subtilis to import extracellular DNA fragments into the cell and incorporate the recombinogenic DNA into the genome vector by homologous recombination. The BGM vector system has several attractive properties, such as a megabase cloning capacity, stable propagation of cloned DNA inserts, and various modification strategies using RecA-mediated homologous recombination. However, the endogenous RecA activity may cause undesirable recombination, as has been observed in yeast artificial chromosome systems. In this study, we developed a novel BGM vector system of an inducible recA expression BGM vector (iREX), in which the expression of recA can be controlled by xylose in the medium. Results: We constructed the iREX system by introducing the xylose-inducible recA expression cassette followed by the targeted deletion of the endogenous recA. Western blot analysis showed that the expression of recA was strictly controlled by xylose in the medium. In the absence of xylose, recA was not expressed in the iREX, and the RecA-mediated recombination reactions were greatly suppressed. By contrast, the addition of xylose successfully induced RecA expression, which enabled the iREX to exploit the same capacities of transformation and gene modifications observed with the conventional BGM vector. In addition, an evaluation of the stability of the cloned DNA insert demonstrated that the DNA fragments containing homologous sequences were more stably maintained in the iREX by suppressing undesirable homologous recombination. Conclusions: We developed a novel BGM vector with inducible recA expression system, iREX, which enables us to manipulate large DNA fragments more stably than the conventional BGM vector by suppressing undesirable recombination. In addition, we demonstrate that the iREX can be applied to handling the DNA, which has several homologous sequences, such as multiple-reporter expression cassettes. Thus, the iREX expands the utility of the BGM vector as a platform for engineering large DNA fragments.

Original languageEnglish
Article number209
JournalBMC Genomics
Volume16
Issue number1
DOIs
Publication statusPublished - 2015 Mar 18

Fingerprint

Bacillus subtilis
Genome
Xylose
DNA
Homologous Recombination
Genetic Recombination
Sequence Homology
Organism Cloning
Yeast Artificial Chromosomes
Mental Competency
Western Blotting
Genes

Keywords

  • Bacillus subtilis
  • BGM vector
  • Genome engineering
  • Homologous recombination
  • RecA

ASJC Scopus subject areas

  • Biotechnology
  • Genetics

Cite this

An inducible recA expression Bacillus subtilis genome vector for stable manipulation of large DNA fragments. / Ogawa, Takafumi; Iwata, Tetsuo; Kaneko, Shinya; Itaya, Mitsuhiro; Hirota, Junji.

In: BMC Genomics, Vol. 16, No. 1, 209, 18.03.2015.

Research output: Contribution to journalArticle

Ogawa, Takafumi ; Iwata, Tetsuo ; Kaneko, Shinya ; Itaya, Mitsuhiro ; Hirota, Junji. / An inducible recA expression Bacillus subtilis genome vector for stable manipulation of large DNA fragments. In: BMC Genomics. 2015 ; Vol. 16, No. 1.
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