Analysis of population clonal diversity using microsatellite markers in the salt marsh sedge Carex scabrifolia in western Japan

Yoshikuni Hodoki, Kako Ohbayashi, Hidenobu Kunii

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Carex scabrifolia, a perennial herb that commonly grows on sandbars in lagoons and tidal estuaries, is threatened by habitat reduction in some areas of Japan. Clonal diversity and the extent of gene flow among ten populations located along the Seto Inland Sea and the Japan Sea in western Japan were examined using six microsatellite loci. From 299 samples, we detected 77 multilocus genotypes. The mean number of alleles per population was 2.8 and the mean clonal diversity was 0.23. Many populations consisted of small patches, and the mean number of genets per patch was 2.0. The average number of alleles per locus and clonal diversity were positively correlated with the number of patches within a watershed. Gene flow was detected between the Ichikawa River and the Ohta River populations along the Seto Inland Sea, and weak differentiation among populations located along the Seto Inland Sea was observed. Our results suggest that effective conservation of C. scabrifolia populations should include maintaining all patches within a watershed regardless of population size, thus promoting genotype preservation.

Original languageEnglish
Pages (from-to)9-15
Number of pages7
JournalLandscape and Ecological Engineering
Volume10
Issue number1
DOIs
Publication statusPublished - 2014 Jan

Fingerprint

inland sea
sedge
saltmarsh
gene flow
allele
genotype
watershed
sandbar
genet
river
herb
population size
lagoon
estuary
habitat
analysis
marker

Keywords

  • Clonal diversity
  • Gene flow
  • SSR marker
  • Tidal estuary

ASJC Scopus subject areas

  • Management, Monitoring, Policy and Law
  • Nature and Landscape Conservation
  • Ecology

Cite this

Analysis of population clonal diversity using microsatellite markers in the salt marsh sedge Carex scabrifolia in western Japan. / Hodoki, Yoshikuni; Ohbayashi, Kako; Kunii, Hidenobu.

In: Landscape and Ecological Engineering, Vol. 10, No. 1, 01.2014, p. 9-15.

Research output: Contribution to journalArticle

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