Biochemical, metabolomic, and genetic analyses of dephospho coenzyme a kinase involved in coenzyme a biosynthesis in the human enteric parasite entamoeba histolytica

Arif Nurkanto, Ghulam Jeelani, Takehiro Yamamoto, Takako Hishiki, Yoshiko Naito, Makoto Suematsu, Tetsuo Hashimoto, Tomoyoshi Nozaki

Research output: Contribution to journalArticle

Abstract

Coenzyme A (CoA) is an essential cofactor for numerous cellular reactions in all living organisms. In the protozoan parasite Entamoeba histolytica, CoA is synthesized in a pathway consisting of four enzymes with dephospho-CoA kinase (DPCK) catalyzing the last step. However, the metabolic and physiological roles of E. histolytica DPCK remain elusive. In this study, we took biochemical, reverse genetic, and metabolomic approaches to elucidate role of DPCK in E. histolytica. The E. histolytica genome encodes two DPCK isotypes (EhDPCK1 and EhDPCK2). Epigenetic gene silencing of Ehdpck1 and Ehdpck2 caused significant reduction of DPCK activity, intracellular CoA concentrations, and also led to growth retardation in vitro, suggesting importance of DPCK for CoA synthesis and proliferation. Furthermore, metabolomic analysis showed that suppression of Ehdpck gene expression also caused decrease in the level of acetyl-CoA, and metabolites involved in amino acid, glycogen, hexosamine, nucleic acid metabolisms, chitin, and polyamine biosynthesis. The kinetic properties of E. histolytica and human DPCK showed remarkable differences, e.g., the Km values of E. histolytica and human DPCK were 58–114 and 5.2 μM toward dephospho-CoA and 15–20 and 192 μM for ATP, respectively. Phylogenetic analysis also supported the uniqueness of the amebic enzyme compared to the human counterpart. These biochemical, evolutionary features, and physiological importance of EhDPCKs indicate that EhDPCK represents the rational target for the development of anti-amebic agents.

Original languageEnglish
Article number2902
JournalFrontiers in Microbiology
Volume9
Issue numberNOV
DOIs
Publication statusPublished - 2018 Nov 30

Fingerprint

Entamoeba histolytica
Metabolomics
Coenzymes
Molecular Biology
Parasites
Phosphotransferases
Coenzyme A
Hexosamines
Reverse Genetics
Acetyl Coenzyme A
Chitin
dephospho-CoA kinase
Polyamines
Gene Silencing
Enzymes
Glycogen
Epigenomics
Nucleic Acids
Adenosine Triphosphate
Genome

Keywords

  • Coenzyme A
  • Drug development
  • Entamoeba histolytica
  • Gene silencing
  • Metabolome

ASJC Scopus subject areas

  • Microbiology
  • Microbiology (medical)

Cite this

Biochemical, metabolomic, and genetic analyses of dephospho coenzyme a kinase involved in coenzyme a biosynthesis in the human enteric parasite entamoeba histolytica. / Nurkanto, Arif; Jeelani, Ghulam; Yamamoto, Takehiro; Hishiki, Takako; Naito, Yoshiko; Suematsu, Makoto; Hashimoto, Tetsuo; Nozaki, Tomoyoshi.

In: Frontiers in Microbiology, Vol. 9, No. NOV, 2902, 30.11.2018.

Research output: Contribution to journalArticle

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