TY - GEN
T1 - Celldesigner
T2 - 2006 Winter Simulation Conference, WSC
AU - Funahashi, Akira
AU - Matsuoka, Yukiko
AU - Jouraku, Akiya
AU - Kitano, Hiroaki
AU - Kikuchi, Norihiro
PY - 2006/12/1
Y1 - 2006/12/1
N2 - Understanding of logic and dynamics of gene-regulatory and biochemical networks is a major challenge of systems biology. To facilitate this research topic, we have developed CellDesigner, a modeling tool of gene-regulatory and biochemical networks. CellDesigner supports users to easily create such networks using solidly defined and comprehensive graphical representation (SBGN: Systems Biology Graphical Notation). CellDesigner is SBML compliant, and is SBW-enabled software so that it can import/export SBML described documents and can integrate with other SBW-enabled simulation/analysis software packages. CellDesigner also supports simulation and parameter search, which is supported by integration with SBML ODE Solver, enabling us to simulate through our sophisticated graphical user interface. We could also browse and modify existing SBML models with references to existing databases. CellDesigner is implemented in Java, thus it runs on various platforms such as Windows, Linux, and MacOS X. CellDesigner is freely available via the Web.
AB - Understanding of logic and dynamics of gene-regulatory and biochemical networks is a major challenge of systems biology. To facilitate this research topic, we have developed CellDesigner, a modeling tool of gene-regulatory and biochemical networks. CellDesigner supports users to easily create such networks using solidly defined and comprehensive graphical representation (SBGN: Systems Biology Graphical Notation). CellDesigner is SBML compliant, and is SBW-enabled software so that it can import/export SBML described documents and can integrate with other SBW-enabled simulation/analysis software packages. CellDesigner also supports simulation and parameter search, which is supported by integration with SBML ODE Solver, enabling us to simulate through our sophisticated graphical user interface. We could also browse and modify existing SBML models with references to existing databases. CellDesigner is implemented in Java, thus it runs on various platforms such as Windows, Linux, and MacOS X. CellDesigner is freely available via the Web.
UR - http://www.scopus.com/inward/record.url?scp=40849107093&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=40849107093&partnerID=8YFLogxK
U2 - 10.1109/WSC.2006.322946
DO - 10.1109/WSC.2006.322946
M3 - Conference contribution
AN - SCOPUS:40849107093
SN - 1424405017
SN - 9781424405015
T3 - Proceedings - Winter Simulation Conference
SP - 1707
EP - 1712
BT - Proceedings of the 2006 Winter Simulation Conference, WSC
Y2 - 3 December 2006 through 6 December 2006
ER -