TY - JOUR
T1 - Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma
T2 - A Case Report
AU - Ito, Munehiro
AU - Fujiwara, Yutaka
AU - Kubo, Takashi
AU - Matsushita, Hiromichi
AU - Kumamoto, Tadashi
AU - Suzuki, Tatsuya
AU - Sunami, Kuniko
AU - Yamamoto, Noboru
AU - Kohno, Takashi
N1 - Funding Information:
This study was supported by the Japan Agency for Medical Research and Development (AMED) (17lk1403003h0001 and 18lk1403003h0002) and National Cancer Center Research and Development Fund (30-A-6, and NCC Biobank).
Funding Information:
The authors would like to thank all the medical staff who were involved in the care of the patient and the staff of NCC-Oncopanel. We thank Libby Cone, MD, MA, from DMC Corp. (www.dmed.co.jp) for editing drafts of this manuscript. Funding. This study was supported by the Japan Agency for Medical Research and Development (AMED) (17lk1403003h0001 and 18lk1403003h0002) and National Cancer Center Research and Development Fund (30-A-6, and NCC Biobank).
Funding Information:
Conflict of Interest: YF reports speaker’s bureau from Sysmex. NY is a recipient of a research grant from Japan Agency for Medical Research and Development (AMED, 17lk1403003h0001, and 18lk1403003h0002). KS and TKo are recipients of a collaborative research grant from the Sysmex Corporation.
Publisher Copyright:
© Copyright © 2020 Ito, Fujiwara, Kubo, Matsushita, Kumamoto, Suzuki, Sunami, Yamamoto and Kohno.
PY - 2020/2/13
Y1 - 2020/2/13
N2 - Reliable and accurate next generation sequencing (NGS) technologies are important in precision medicine. Analysis using currently available NGS genomic tests is conducted on cancer-derived DNA collected from tumor tissue, blood, or both. Clonal hematopoiesis (CH) produces a detectable somatic clonal mutation that is commonly associated with clonal expansion of hematopoietic cells with age and genomic analysis of blood samples can be used to detect CH. A 74-year-old Korean male had lung adenocarcinoma with a metastasis to the left scapula. He underwent palliative radiotherapy to the left scapula and received multi-line chemotherapies. After disease progression, he underwent re-biopsy of the metastatic tumor tissue from lung cancer and concomitant blood sampling. NGS genomic testing revealed no significant genomic mutation in the tumor tissue DNA but showed the TP53 mutation C135Y in peripheral blood DNA. To investigate the discordance between the genotyping results in tumor tissue and blood, we tested for the TP53 mutation using a target sequencing test in blood and normal oral mucosa. The TP53 mutation C135Y was only detected in the blood sample, confirming the presence of TP53-mutated CH. We should be aware of different characteristics in NGS genomic testing including sample type such as tumor, blood, or paired specimens. Performing genomic testing on paired tumor and blood samples is effective for discriminating mutations derived from CH from germline mutations and somatic mutations in tumor cells.
AB - Reliable and accurate next generation sequencing (NGS) technologies are important in precision medicine. Analysis using currently available NGS genomic tests is conducted on cancer-derived DNA collected from tumor tissue, blood, or both. Clonal hematopoiesis (CH) produces a detectable somatic clonal mutation that is commonly associated with clonal expansion of hematopoietic cells with age and genomic analysis of blood samples can be used to detect CH. A 74-year-old Korean male had lung adenocarcinoma with a metastasis to the left scapula. He underwent palliative radiotherapy to the left scapula and received multi-line chemotherapies. After disease progression, he underwent re-biopsy of the metastatic tumor tissue from lung cancer and concomitant blood sampling. NGS genomic testing revealed no significant genomic mutation in the tumor tissue DNA but showed the TP53 mutation C135Y in peripheral blood DNA. To investigate the discordance between the genotyping results in tumor tissue and blood, we tested for the TP53 mutation using a target sequencing test in blood and normal oral mucosa. The TP53 mutation C135Y was only detected in the blood sample, confirming the presence of TP53-mutated CH. We should be aware of different characteristics in NGS genomic testing including sample type such as tumor, blood, or paired specimens. Performing genomic testing on paired tumor and blood samples is effective for discriminating mutations derived from CH from germline mutations and somatic mutations in tumor cells.
KW - TP53 mutation
KW - cell-free DNA
KW - clonal hematopoiesis
KW - next generation sequencing
KW - precision medicine
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U2 - 10.3389/fonc.2020.00113
DO - 10.3389/fonc.2020.00113
M3 - Article
AN - SCOPUS:85083914760
SN - 2234-943X
VL - 10
JO - Frontiers in Oncology
JF - Frontiers in Oncology
M1 - 113
ER -