Cutoff radius effect of the isotropic periodic sum method in homogeneous system. II. Water

Kazuaki Takahashi, Tetsu Narumi, Kenji Yasuoka

Research output: Contribution to journalArticle

29 Citations (Scopus)

Abstract

Molecular dynamics simulation has been applied for water to compare the isotropic periodic sum (IPS) method [X. Wu and B. R. Brooks, J. Chem. Phys. 122, 044107 (2005)] with the Ewald sum based on the diffusion coefficient and liquid structure. The IPS method gives a good estimation for the self-diffusion coefficient at a cutoff radius, rc, greater than 2.2 nm; however, the radial distribution function g (r) has a notable deviation. The peak of this deviation appears at specific intermolecular distances which are near each cutoff radius and decrease in proportion to the inverse of the cube of r c. Thus the deviation becomes insignificant (less than 1%) at r c greater than 2.2 nm. The distance dependent Kirkwood factor G k (r) was also calculated, and since the truncation of a long-range interaction of the cutofflike method (such as cutoff with or without the switch function and the reaction field) shows serious shortcomings for dipole-dipole correlations in bulk water systems, this was observed by comparing the shape to that of the Ewald sum [Y. Yonetani, J. Chem. Phys. 124, 204501 (2006); D. van der Spoel and P. J. van Maaren, J. Chem. Theory Comput. 2, 1 (2006)]. The G k (r) of cutofflike method greatly deviate from that of the Ewald sum. However, the discrepancy of Gk (r) for the IPS method was found to be much less than that of other typical cutofflike methods. In conclusion, the IPS method is an adequately accurate technique for estimating transport coefficients and the liquid structure of water in a homogeneous system at long cutoff distances.

Original languageEnglish
Article number014109
JournalJournal of Chemical Physics
Volume133
Issue number1
DOIs
Publication statusPublished - 2010 Jul 7

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cut-off
radii
Water
water
Liquids
Distribution functions
Molecular dynamics
deviation
Switches
diffusion coefficient
dipoles
Computer simulation
liquids
radial distribution
proportion
estimating
switches
transport properties
distribution functions
molecular dynamics

ASJC Scopus subject areas

  • Physics and Astronomy(all)
  • Physical and Theoretical Chemistry

Cite this

Cutoff radius effect of the isotropic periodic sum method in homogeneous system. II. Water. / Takahashi, Kazuaki; Narumi, Tetsu; Yasuoka, Kenji.

In: Journal of Chemical Physics, Vol. 133, No. 1, 014109, 07.07.2010.

Research output: Contribution to journalArticle

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