Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare

Jun Yasuda, Kengo Kinoshita, Fumiki Katsuoka, Inaho Danjoh, Mika Sakurai-Yageta, Ikuko N. Motoike, Yoko Kuroki, Sakae Saito, Kaname Kojima, Matsuyuki Shirota, Daisuke Saigusa, Akihito Otsuki, Junko Kawashima, Yumi Yamaguchi-Kabata, Shu Tadaka, Yuichi Aoki, Takahiro Mimori, Kazuki Kumada, Jin Inoue, Satoshi MakinoMiho Kuriki, Nobuo Fuse, Seizo Koshiba, Osamu Tanabe, Masao Nagasaki, Gen Tamiya, Ritsuko Shimizu, Takako Takai-Igarashi, Soichi Ogishima, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Akito Tsuboi, Hideyasu Kiyomoto, Tadashi Ishii, Hiroaki Tomita, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroshi Kawame, Hiroshi Tanaka, Yasuyuki Taki, Nobuo Yaegashi, Shigeo Kure, Fuji Nagami, Kenjiro Kosaki, Yoichi Sutoh, Tsuyoshi Hachiya, Atsushi Shimizu, Makoto Sasaki, Masayuki Yamamoto

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Personalized healthcare (PHC) based on an individual's genetic make-up is one of the most advanced, yet feasible, forms of medical care. The Tohoku Medical Megabank (TMM) Project aims to combine population genomics, medical genetics and prospective cohort studies to develop a critical infrastructure for the establishment of PHC. To date, a TMM CommCohort (adult general population) and a TMM BirThree Cohort (birth+three-generation families) have conducted recruitments and baseline surveys. Genome analyses as part of the TMM Project will aid in the development of a high-fidelity whole-genome Japanese reference panel, in designing custom single-nucleotide polymorphism (SNP) arrays specific to Japanese, and in estimation of the biological significance of genetic variations through linked investigations of the cohorts. Whole-genome sequencing from >3,500 unrelated Japanese and establishment of a Japanese reference genome sequence from long-read data have been done. We next aim to obtain genotype data for all TMM cohort participants (>150,000) using our custom SNP arrays. These data will help identify disease-associated genomic signatures in the Japanese population, while genomic data from TMM BirThree Cohort participants will be used to improve the reference genome panel. Follow-up of the cohort participants will allow us to test the genetic markers and, consequently, contribute to the realization of PHC.

Original languageEnglish
Pages (from-to)139-158
Number of pages20
JournalJournal of biochemistry
Volume165
Issue number2
DOIs
Publication statusPublished - 2019 Feb 1

Fingerprint

Genes
Genome
Delivery of Health Care
Metagenomics
Polymorphism
Single Nucleotide Polymorphism
Nucleotides
Critical infrastructures
Medical Genetics
Genetic Markers
Health care
Cohort Studies
Genotype
Parturition
Prospective Studies
Population

Keywords

  • Genome reference panel
  • Japonica array
  • Personalized healthcare
  • Tohoku medical megabank project
  • Whole genome sequencing

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology

Cite this

Yasuda, J., Kinoshita, K., Katsuoka, F., Danjoh, I., Sakurai-Yageta, M., Motoike, I. N., ... Yamamoto, M. (2019). Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. Journal of biochemistry, 165(2), 139-158. https://doi.org/10.1093/jb/mvy096

Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. / Yasuda, Jun; Kinoshita, Kengo; Katsuoka, Fumiki; Danjoh, Inaho; Sakurai-Yageta, Mika; Motoike, Ikuko N.; Kuroki, Yoko; Saito, Sakae; Kojima, Kaname; Shirota, Matsuyuki; Saigusa, Daisuke; Otsuki, Akihito; Kawashima, Junko; Yamaguchi-Kabata, Yumi; Tadaka, Shu; Aoki, Yuichi; Mimori, Takahiro; Kumada, Kazuki; Inoue, Jin; Makino, Satoshi; Kuriki, Miho; Fuse, Nobuo; Koshiba, Seizo; Tanabe, Osamu; Nagasaki, Masao; Tamiya, Gen; Shimizu, Ritsuko; Takai-Igarashi, Takako; Ogishima, Soichi; Hozawa, Atsushi; Kuriyama, Shinichi; Sugawara, Junichi; Tsuboi, Akito; Kiyomoto, Hideyasu; Ishii, Tadashi; Tomita, Hiroaki; Minegishi, Naoko; Suzuki, Yoichi; Suzuki, Kichiya; Kawame, Hiroshi; Tanaka, Hiroshi; Taki, Yasuyuki; Yaegashi, Nobuo; Kure, Shigeo; Nagami, Fuji; Kosaki, Kenjiro; Sutoh, Yoichi; Hachiya, Tsuyoshi; Shimizu, Atsushi; Sasaki, Makoto; Yamamoto, Masayuki.

In: Journal of biochemistry, Vol. 165, No. 2, 01.02.2019, p. 139-158.

Research output: Contribution to journalArticle

Yasuda, J, Kinoshita, K, Katsuoka, F, Danjoh, I, Sakurai-Yageta, M, Motoike, IN, Kuroki, Y, Saito, S, Kojima, K, Shirota, M, Saigusa, D, Otsuki, A, Kawashima, J, Yamaguchi-Kabata, Y, Tadaka, S, Aoki, Y, Mimori, T, Kumada, K, Inoue, J, Makino, S, Kuriki, M, Fuse, N, Koshiba, S, Tanabe, O, Nagasaki, M, Tamiya, G, Shimizu, R, Takai-Igarashi, T, Ogishima, S, Hozawa, A, Kuriyama, S, Sugawara, J, Tsuboi, A, Kiyomoto, H, Ishii, T, Tomita, H, Minegishi, N, Suzuki, Y, Suzuki, K, Kawame, H, Tanaka, H, Taki, Y, Yaegashi, N, Kure, S, Nagami, F, Kosaki, K, Sutoh, Y, Hachiya, T, Shimizu, A, Sasaki, M & Yamamoto, M 2019, 'Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare', Journal of biochemistry, vol. 165, no. 2, pp. 139-158. https://doi.org/10.1093/jb/mvy096
Yasuda J, Kinoshita K, Katsuoka F, Danjoh I, Sakurai-Yageta M, Motoike IN et al. Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. Journal of biochemistry. 2019 Feb 1;165(2):139-158. https://doi.org/10.1093/jb/mvy096
Yasuda, Jun ; Kinoshita, Kengo ; Katsuoka, Fumiki ; Danjoh, Inaho ; Sakurai-Yageta, Mika ; Motoike, Ikuko N. ; Kuroki, Yoko ; Saito, Sakae ; Kojima, Kaname ; Shirota, Matsuyuki ; Saigusa, Daisuke ; Otsuki, Akihito ; Kawashima, Junko ; Yamaguchi-Kabata, Yumi ; Tadaka, Shu ; Aoki, Yuichi ; Mimori, Takahiro ; Kumada, Kazuki ; Inoue, Jin ; Makino, Satoshi ; Kuriki, Miho ; Fuse, Nobuo ; Koshiba, Seizo ; Tanabe, Osamu ; Nagasaki, Masao ; Tamiya, Gen ; Shimizu, Ritsuko ; Takai-Igarashi, Takako ; Ogishima, Soichi ; Hozawa, Atsushi ; Kuriyama, Shinichi ; Sugawara, Junichi ; Tsuboi, Akito ; Kiyomoto, Hideyasu ; Ishii, Tadashi ; Tomita, Hiroaki ; Minegishi, Naoko ; Suzuki, Yoichi ; Suzuki, Kichiya ; Kawame, Hiroshi ; Tanaka, Hiroshi ; Taki, Yasuyuki ; Yaegashi, Nobuo ; Kure, Shigeo ; Nagami, Fuji ; Kosaki, Kenjiro ; Sutoh, Yoichi ; Hachiya, Tsuyoshi ; Shimizu, Atsushi ; Sasaki, Makoto ; Yamamoto, Masayuki. / Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. In: Journal of biochemistry. 2019 ; Vol. 165, No. 2. pp. 139-158.
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