TY - JOUR
T1 - Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants
AU - Mao, Lingfeng
AU - Kawaide, Hiroshi
AU - Higuchi, Toshiya
AU - Chen, Meihong
AU - Miyamoto, Koji
AU - Hirata, Yoshiki
AU - Kimura, Honoka
AU - Miyazaki, Sho
AU - Teruya, Miyu
AU - Fujiwara, Kaoru
AU - Tomita, Keisuke
AU - Yamane, Hisakazu
AU - Hayashi, Ken Ichiro
AU - Nojiri, Hideaki
AU - Jia, Lei
AU - Qiu, Jie
AU - Ye, Chuyu
AU - Timko, Michael P.
AU - Fan, Longjiang
AU - Okada, Kazunori
N1 - Funding Information:
ACKNOWLEDGMENTS. We thank Prof. Toshiyuki Ohnishi (Shizuoka University) for providing the plasmid pRI-ATR1, and Prof. George Lomonossoff (John Innes Centre) for N. benthamiana expression vector pEAQ-HT. We also thank Professor David R. Nelson (University of Tennessee, Memphis, TN) for giving the gene names of C. plumiforme P450s. This work was supported by grants from the National Natural Science Foundation (9143511), Zhejiang Natural Science Foundation (LZ17C130001), Jiangsu Collaborative Innovation Center for Modern Crop Production and 111 Project B17039 (to L.F.), and Grants-in-Aid for Scientific Research - KAKENHI 17H03811 (to K.O.) and 19H02894 (to H. Kawaide).
Funding Information:
We thank Prof. Toshiyuki Ohnishi (Shizuoka University) for providing the plasmid pRI-ATR1, and Prof. George Lomonossoff (John Innes Centre) for N. benthamiana expression vector pEAQ-HT. We also thank Professor David R. Nelson (University of Tennessee, Memphis, TN) for giving the gene names of C. plumiforme P450s. This work was supported by grants from the National Natural Science Foundation (9143511), Zhejiang Natural Science Foundation (LZ17C130001), Jiangsu Collaborative Innovation Center for Modern Crop Production and 111 Project B17039 (to L.F.), and Grants-in-Aid for Scientific Research ??? KAKENHI 17H03811 (to K.O.) and 19H02894 (to H. Kawaide).
Publisher Copyright:
© 2020 National Academy of Sciences. All rights reserved.
PY - 2020/6/2
Y1 - 2020/6/2
N2 - Momilactones are bioactive diterpenoids that contribute to plant defense against pathogens and allelopathic interactions between plants. Both cultivated and wild grass species of Oryza and Echinochloa crus-galli (barnyard grass) produce momilactones using a biosynthetic gene cluster (BGC) in their genomes. The bryophyte Calohypnum plumiforme (formerly Hypnum plumaeforme) also produces momilactones, and the bifunctional diterpene cyclase gene CpDTC1/HpDTC1, which is responsible for the production of the diterpene framework, has been characterized. To understand the molecular architecture of the momilactone biosynthetic genes in the moss genome and their evolutionary relationships with other momilactone-producing plants, we sequenced and annotated the C. plumiforme genome. The data revealed a 150-kb genomic region that contains two cytochrome P450 genes, the CpDTC1/HpDTC1 gene and the "dehydrogenase momilactone A synthase" gene tandemly arranged and inductively transcribed following stress exposure. The predicted enzymatic functions in yeast and recombinant assay and the successful pathway reconstitution in Nicotiana benthamiana suggest that it is a functional BGC responsible for momilactone production. Furthermore, in a survey of genomic sequences of a broad range of plant species, we found that momilactone BGC is limited to the two grasses (Oryza and Echinochloa) and C. plumiforme, with no synteny among these genomes. These results indicate that while the gene cluster in C. plumiforme is functionally similar to that in rice and barnyard grass, it is likely a product of convergent evolution. To the best of our knowledge, this report of a BGC for a specialized plant defense metabolite in bryophytes is unique.
AB - Momilactones are bioactive diterpenoids that contribute to plant defense against pathogens and allelopathic interactions between plants. Both cultivated and wild grass species of Oryza and Echinochloa crus-galli (barnyard grass) produce momilactones using a biosynthetic gene cluster (BGC) in their genomes. The bryophyte Calohypnum plumiforme (formerly Hypnum plumaeforme) also produces momilactones, and the bifunctional diterpene cyclase gene CpDTC1/HpDTC1, which is responsible for the production of the diterpene framework, has been characterized. To understand the molecular architecture of the momilactone biosynthetic genes in the moss genome and their evolutionary relationships with other momilactone-producing plants, we sequenced and annotated the C. plumiforme genome. The data revealed a 150-kb genomic region that contains two cytochrome P450 genes, the CpDTC1/HpDTC1 gene and the "dehydrogenase momilactone A synthase" gene tandemly arranged and inductively transcribed following stress exposure. The predicted enzymatic functions in yeast and recombinant assay and the successful pathway reconstitution in Nicotiana benthamiana suggest that it is a functional BGC responsible for momilactone production. Furthermore, in a survey of genomic sequences of a broad range of plant species, we found that momilactone BGC is limited to the two grasses (Oryza and Echinochloa) and C. plumiforme, with no synteny among these genomes. These results indicate that while the gene cluster in C. plumiforme is functionally similar to that in rice and barnyard grass, it is likely a product of convergent evolution. To the best of our knowledge, this report of a BGC for a specialized plant defense metabolite in bryophytes is unique.
KW - Bryophytes
KW - Convergent evolution
KW - Diterpene momilactones
KW - Gene cluster
KW - Specialized metabolites
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U2 - 10.1073/pnas.1914373117
DO - 10.1073/pnas.1914373117
M3 - Article
C2 - 32409606
AN - SCOPUS:85085905451
SN - 0027-8424
VL - 117
SP - 12472
EP - 12480
JO - Proceedings of the National Academy of Sciences of the United States of America
JF - Proceedings of the National Academy of Sciences of the United States of America
IS - 22
ER -