IDATEN and G-SITENNO

GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA

Yuki Sekiguchi, Masaki Yamamoto, Tomotaka Oroguchi, Yuki Takayama, Shigeyuki Suzuki, Masayoshi Nakasako

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

Using our custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors, cryogenic coherent X-ray diffraction imaging experiments have been undertaken at the SPring-8 Angstrom Compact free electron LAser (SACLA) facility. To efficiently perform experiments and data processing, two software suites with user-friendly graphical user interfaces have been developed. The first is a program suite named IDATEN, which was developed to easily conduct four procedures during experiments: aligning KOTOBUKI-1, loading a flash-cooled sample into the cryogenic goniometer stage inside the vacuum chamber of KOTOBUKI-1, adjusting the sample position with respect to the X-ray beam using a pair of telescopes, and collecting diffraction data by raster scanning the sample with X-ray pulses. Named G-SITENNO, the other suite is an automated version of the original SITENNO suite, which was designed for processing diffraction data. These user-friendly software suites are now indispensable for collecting a large number of diffraction patterns and for processing the diffraction patterns immediately after collecting data within a limited beam time.

Original languageEnglish
Pages (from-to)1378-1383
Number of pages6
JournalJournal of Synchrotron Radiation
Volume21
Issue number6
DOIs
Publication statusPublished - 2014 Nov 1

Fingerprint

graphical user interface
Free electron lasers
Graphical user interfaces
free electron lasers
Diffraction
computer programs
Imaging techniques
X ray diffraction
Cryogenics
Diffraction patterns
diffraction
cryogenics
Goniometers
X rays
x rays
diffraction patterns
Experiments
raster scanning
Processing
Charge coupled devices

Keywords

  • coherent X-ray diffraction imaging
  • structural analysis of non-crystalline particles
  • X-ray free-electron laser

ASJC Scopus subject areas

  • Instrumentation
  • Nuclear and High Energy Physics
  • Radiation

Cite this

IDATEN and G-SITENNO : GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA. / Sekiguchi, Yuki; Yamamoto, Masaki; Oroguchi, Tomotaka; Takayama, Yuki; Suzuki, Shigeyuki; Nakasako, Masayoshi.

In: Journal of Synchrotron Radiation, Vol. 21, No. 6, 01.11.2014, p. 1378-1383.

Research output: Contribution to journalArticle

@article{db2bef0ee9d446808f563dbeaca5352c,
title = "IDATEN and G-SITENNO: GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA",
abstract = "Using our custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors, cryogenic coherent X-ray diffraction imaging experiments have been undertaken at the SPring-8 Angstrom Compact free electron LAser (SACLA) facility. To efficiently perform experiments and data processing, two software suites with user-friendly graphical user interfaces have been developed. The first is a program suite named IDATEN, which was developed to easily conduct four procedures during experiments: aligning KOTOBUKI-1, loading a flash-cooled sample into the cryogenic goniometer stage inside the vacuum chamber of KOTOBUKI-1, adjusting the sample position with respect to the X-ray beam using a pair of telescopes, and collecting diffraction data by raster scanning the sample with X-ray pulses. Named G-SITENNO, the other suite is an automated version of the original SITENNO suite, which was designed for processing diffraction data. These user-friendly software suites are now indispensable for collecting a large number of diffraction patterns and for processing the diffraction patterns immediately after collecting data within a limited beam time.",
keywords = "coherent X-ray diffraction imaging, structural analysis of non-crystalline particles, X-ray free-electron laser",
author = "Yuki Sekiguchi and Masaki Yamamoto and Tomotaka Oroguchi and Yuki Takayama and Shigeyuki Suzuki and Masayoshi Nakasako",
year = "2014",
month = "11",
day = "1",
doi = "10.1107/S1600577514017111",
language = "English",
volume = "21",
pages = "1378--1383",
journal = "Journal of Synchrotron Radiation",
issn = "0909-0495",
publisher = "International Union of Crystallography",
number = "6",

}

TY - JOUR

T1 - IDATEN and G-SITENNO

T2 - GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA

AU - Sekiguchi, Yuki

AU - Yamamoto, Masaki

AU - Oroguchi, Tomotaka

AU - Takayama, Yuki

AU - Suzuki, Shigeyuki

AU - Nakasako, Masayoshi

PY - 2014/11/1

Y1 - 2014/11/1

N2 - Using our custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors, cryogenic coherent X-ray diffraction imaging experiments have been undertaken at the SPring-8 Angstrom Compact free electron LAser (SACLA) facility. To efficiently perform experiments and data processing, two software suites with user-friendly graphical user interfaces have been developed. The first is a program suite named IDATEN, which was developed to easily conduct four procedures during experiments: aligning KOTOBUKI-1, loading a flash-cooled sample into the cryogenic goniometer stage inside the vacuum chamber of KOTOBUKI-1, adjusting the sample position with respect to the X-ray beam using a pair of telescopes, and collecting diffraction data by raster scanning the sample with X-ray pulses. Named G-SITENNO, the other suite is an automated version of the original SITENNO suite, which was designed for processing diffraction data. These user-friendly software suites are now indispensable for collecting a large number of diffraction patterns and for processing the diffraction patterns immediately after collecting data within a limited beam time.

AB - Using our custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors, cryogenic coherent X-ray diffraction imaging experiments have been undertaken at the SPring-8 Angstrom Compact free electron LAser (SACLA) facility. To efficiently perform experiments and data processing, two software suites with user-friendly graphical user interfaces have been developed. The first is a program suite named IDATEN, which was developed to easily conduct four procedures during experiments: aligning KOTOBUKI-1, loading a flash-cooled sample into the cryogenic goniometer stage inside the vacuum chamber of KOTOBUKI-1, adjusting the sample position with respect to the X-ray beam using a pair of telescopes, and collecting diffraction data by raster scanning the sample with X-ray pulses. Named G-SITENNO, the other suite is an automated version of the original SITENNO suite, which was designed for processing diffraction data. These user-friendly software suites are now indispensable for collecting a large number of diffraction patterns and for processing the diffraction patterns immediately after collecting data within a limited beam time.

KW - coherent X-ray diffraction imaging

KW - structural analysis of non-crystalline particles

KW - X-ray free-electron laser

UR - http://www.scopus.com/inward/record.url?scp=84913535617&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84913535617&partnerID=8YFLogxK

U2 - 10.1107/S1600577514017111

DO - 10.1107/S1600577514017111

M3 - Article

VL - 21

SP - 1378

EP - 1383

JO - Journal of Synchrotron Radiation

JF - Journal of Synchrotron Radiation

SN - 0909-0495

IS - 6

ER -