Lipidomic Signatures and Associated Transcriptomic Profiles of Clear Cell Renal Cell Carcinoma

Kosuke Saito, Eri Arai, Keiko Maekawa, Masaki Ishikawa, Hiroyuki Fujimoto, Ryo Taguchi, Kenji Matsumoto, Yae Kanai, Yoshiro Saito

Research output: Contribution to journalArticle

30 Citations (Scopus)

Abstract

Renal cell carcinoma (RCC) is the most common histological type of adult kidney cancer. In this study, we obtained lipidomic profiles of clear cell RCC (ccRCC), a major RCC subtype, by performing a lipidomic analysis of specimens of cancerous tissue and the surrounding normal renal cortex obtained from the same patients (N = 49). We also compared the lipidomic profiles with the lipogenic transcriptome of specimens of cancerous tissue and the surrounding normal renal cortex for an additional set of patient samples (N = 95). Overall, we detected 326 lipids, including phospholipids, sphingolipids, neutral lipids, and eicosanoids. The levels of more than 70% of the detected lipids were significantly different (P < 0.01, corrected by the false discovery rate). The cancerous tissue was distinguished by higher levels of ether-type phospholipids, cholesterol esters, and triacylglycerols, as well as by lower levels of phospholipids (except for phosphatidylcholines) and polyunsaturated fatty acids. Characteristic changes in the levels of mRNAs and metabolites suggested that the phosphatidylethanolamine (PE) synthesis pathway is suppressed in ccRCC and associated with cell proliferation. The present study represents the lipidomic profiles of ccRCC, which provides novel information about the metabolic changes in renal cancerous tissue and RCC pathophysiology.

Original languageEnglish
Article number28932
JournalScientific Reports
Volume6
DOIs
Publication statusPublished - 2016 Jun 30

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Renal Cell Carcinoma
Kidney
Lipids
Phospholipids
Phospholipid Ethers
Sphingolipids
Eicosanoids
Cholesterol Esters
Kidney Neoplasms
Phosphatidylcholines
Unsaturated Fatty Acids
Transcriptome
Triglycerides
Cell Proliferation
Messenger RNA
Clear-cell metastatic renal cell carcinoma

ASJC Scopus subject areas

  • General

Cite this

Lipidomic Signatures and Associated Transcriptomic Profiles of Clear Cell Renal Cell Carcinoma. / Saito, Kosuke; Arai, Eri; Maekawa, Keiko; Ishikawa, Masaki; Fujimoto, Hiroyuki; Taguchi, Ryo; Matsumoto, Kenji; Kanai, Yae; Saito, Yoshiro.

In: Scientific Reports, Vol. 6, 28932, 30.06.2016.

Research output: Contribution to journalArticle

Saito, K, Arai, E, Maekawa, K, Ishikawa, M, Fujimoto, H, Taguchi, R, Matsumoto, K, Kanai, Y & Saito, Y 2016, 'Lipidomic Signatures and Associated Transcriptomic Profiles of Clear Cell Renal Cell Carcinoma', Scientific Reports, vol. 6, 28932. https://doi.org/10.1038/srep28932
Saito, Kosuke ; Arai, Eri ; Maekawa, Keiko ; Ishikawa, Masaki ; Fujimoto, Hiroyuki ; Taguchi, Ryo ; Matsumoto, Kenji ; Kanai, Yae ; Saito, Yoshiro. / Lipidomic Signatures and Associated Transcriptomic Profiles of Clear Cell Renal Cell Carcinoma. In: Scientific Reports. 2016 ; Vol. 6.
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