Modeling and simulation using cellDesigner

Yukiko Matsuoka; Akira Funahashi; Samik Ghosh; Hiroaki Kitano

doi:10.1007/978-1-4939-0805-9_11

Modeling and simulation using cellDesigner

Yukiko Matsuoka, Akira Funahashi, Samik Ghosh, Hiroaki Kitano

Research output: Contribution to journal › Article

33 Citations (Scopus)

Abstract

In silico modeling and simulation are effective means to understand how the regulatory systems function in life. In this chapter, we explain how to build a model and run the simulation using Cell Designer, adopting the standards such as SBML and SBGN.

Original language	English
Pages (from-to)	121-145
Number of pages	25
Journal	Methods in Molecular Biology
Volume	1164
DOIs	https://doi.org/10.1007/978-1-4939-0805-9_11
Publication status	Published - 2014 Jan 1
Externally published	Yes

Keywords

CellDesigner
Garuda platform
SBGN (systems biology graphical notation)
SBML (systems biology markup language)
Transcription regulatory network

ASJC Scopus subject areas

Molecular Biology
Genetics

Access to Document

10.1007/978-1-4939-0805-9_11

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Matsuoka, Y., Funahashi, A., Ghosh, S., & Kitano, H. (2014). Modeling and simulation using cellDesigner. Methods in Molecular Biology, 1164, 121-145. https://doi.org/10.1007/978-1-4939-0805-9_11

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