Modeling and simulation using cellDesigner

Yukiko Matsuoka; Akira Funahashi; Samik Ghosh; Hiroaki Kitano

doi:10.1007/978-1-4939-0805-9_11

Modeling and simulation using cellDesigner

Yukiko Matsuoka, Akira Funahashi, Samik Ghosh, Hiroaki Kitano

Research output: Contribution to journal › Article › peer-review

55 Citations (Scopus)

Abstract

In silico modeling and simulation are effective means to understand how the regulatory systems function in life. In this chapter, we explain how to build a model and run the simulation using Cell Designer, adopting the standards such as SBML and SBGN.

Original language	English
Pages (from-to)	121-145
Number of pages	25
Journal	Methods in Molecular Biology
Volume	1164
DOIs	https://doi.org/10.1007/978-1-4939-0805-9_11
Publication status	Published - 2014 Jan 1
Externally published	Yes

Keywords

CellDesigner
Garuda platform
SBGN (systems biology graphical notation)
SBML (systems biology markup language)
Transcription regulatory network

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1007/978-1-4939-0805-9_11

Cite this

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author = "Yukiko Matsuoka and Akira Funahashi and Samik Ghosh and Hiroaki Kitano",

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AU - Ghosh, Samik

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KW - SBGN (systems biology graphical notation)

KW - SBML (systems biology markup language)

KW - Transcription regulatory network

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Modeling and simulation using cellDesigner

Abstract

Keywords

ASJC Scopus subject areas

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