Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila

Keita Miyoshi, Tomohiro Miyoshi, Julia Verena Hartig, Haruhiko Siomi, Mikiko C. Siomi

Research output: Contribution to journalArticle

60 Citations (Scopus)

Abstract

In Drosophila, three types of endogenous small RNAs - microRNAs (miRNAs), PIWI-interacting RNAs (piRNAs), and endogenous small-interfering RNAs (endo-siRNAs or esiRNAs) - function as triggers in RNA silencing. Although piRNAs are produced independently of Dicer, miRNA and esiRNA biogenesis pathways require Dicer1 and Dicer2, respectively. Recent studies have shown that among the four isoforms of Loquacious (Loqs), Loqs-PB and Loqs-PD are involved in miRNA and esiRNA processing pathways, respectively. However, how these Loqs isoforms function in their respective small RNA biogenesis pathways remains elusive. Here, we show that Loqs-PD associates specifically with Dicer2 through its C-terminal domain. The Dicer2-Loqs-PD complex contains R2D2, another known Dicer2 partner, and excises both exogenous siRNAs and esiRNAs from their corresponding precursors in vitro. However, Loqs-PD, but not R2D2, enhanced Dicer2 activity. The Dicer2-Loqs-PD complex processes esiRNA precursor hairpins with long stems, which results in the production of AGO2-associated small RNAs. Interestingly, however, small RNAs derived from terminal hairpins of esiRNA precursors are loaded onto AGO1; thus, they are classified as a new subset of miRNAs. These results suggest that the precursor RNA structure determines the biogenesis mechanism of esiRNAs and miRNAs, thereby implicating hairpin structures with long stems as intermediates in the evolution of Drosophila miRNA. Published by Cold Spring Harbor Laboratory Press.

Original languageEnglish
Pages (from-to)506-515
Number of pages10
JournalRNA
Volume16
Issue number3
DOIs
Publication statusPublished - 2010 Mar

Fingerprint

RNA Precursors
MicroRNAs
Small Interfering RNA
Drosophila
RNA
Protein Isoforms
RNA Interference

Keywords

  • Dicer2
  • Drosophila
  • esiRNA
  • Loquacious
  • miRNA

ASJC Scopus subject areas

  • Molecular Biology

Cite this

Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila. / Miyoshi, Keita; Miyoshi, Tomohiro; Hartig, Julia Verena; Siomi, Haruhiko; Siomi, Mikiko C.

In: RNA, Vol. 16, No. 3, 03.2010, p. 506-515.

Research output: Contribution to journalArticle

Miyoshi, Keita ; Miyoshi, Tomohiro ; Hartig, Julia Verena ; Siomi, Haruhiko ; Siomi, Mikiko C. / Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila. In: RNA. 2010 ; Vol. 16, No. 3. pp. 506-515.
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