On negative selection against ATG triplets near start codons in eukaryotic and prokaryotic genomes

Rintaro Saito, Masaru Tomita

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

The frequencies of ATG triplets in the genomes of various species were systematically analyzed, and the frequency of ATG triplets was significantly low around start codons in both prokaryotic and eukaryotic genomes. In eukaryotes, however, the frequency decrease before the start codon is much more evident than that after the start codon. In prokaryotes, on the other hand, the ATG frequency pattern around the start codon is less evident, and - more importantly - symmetric. We also computed average distances between a start codon and its nearest upstream-located ATG triplet and found a general tendency for the average distances to be longer in higher organisms.

Original languageEnglish
Pages (from-to)213-217
Number of pages5
JournalJournal of Molecular Evolution
Volume48
Issue number2
DOIs
Publication statusPublished - 1999

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Keywords

  • AUG triplets
  • Negative selection
  • Start codon
  • Translation initiation
  • Triplet frequency
  • Untranslated region

ASJC Scopus subject areas

  • Genetics
  • Biochemistry
  • Biochemistry, Genetics and Molecular Biology(all)
  • Genetics(clinical)
  • Ecology, Evolution, Behavior and Systematics
  • Molecular Biology
  • Agricultural and Biological Sciences(all)
  • Agricultural and Biological Sciences (miscellaneous)

Cite this

On negative selection against ATG triplets near start codons in eukaryotic and prokaryotic genomes. / Saito, Rintaro; Tomita, Masaru.

In: Journal of Molecular Evolution, Vol. 48, No. 2, 1999, p. 213-217.

Research output: Contribution to journalArticle

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