Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri

Lucia Manni, Fabio Gasparini, Kohji Hotta, Katherine J. Ishizuka, Lorenzo Ricci, Stefano Tiozzo, Ayelet Voskoboynik, Delphine Dauga

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements.

Original languageEnglish
Article numbere96434
JournalPLoS One
Volume9
Issue number5
DOIs
Publication statusPublished - 2014 May 1

Fingerprint

Botryllus schlosseri
Chordata
Ontology
Anatomy
Urochordata
Tunicata
lymphocyte proliferation
Lymphocyte Activation
Larva
Biological Ontologies
fungal anatomy
Comparative Anatomy
Notochord
Developmental Biology
Neural Tube
tadpoles
metamorphosis
Regeneration
Foundries
developmental stages

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Manni, L., Gasparini, F., Hotta, K., Ishizuka, K. J., Ricci, L., Tiozzo, S., ... Dauga, D. (2014). Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri. PLoS One, 9(5), [e96434]. https://doi.org/10.1371/journal.pone.0096434

Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri. / Manni, Lucia; Gasparini, Fabio; Hotta, Kohji; Ishizuka, Katherine J.; Ricci, Lorenzo; Tiozzo, Stefano; Voskoboynik, Ayelet; Dauga, Delphine.

In: PLoS One, Vol. 9, No. 5, e96434, 01.05.2014.

Research output: Contribution to journalArticle

Manni, L, Gasparini, F, Hotta, K, Ishizuka, KJ, Ricci, L, Tiozzo, S, Voskoboynik, A & Dauga, D 2014, 'Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri', PLoS One, vol. 9, no. 5, e96434. https://doi.org/10.1371/journal.pone.0096434
Manni, Lucia ; Gasparini, Fabio ; Hotta, Kohji ; Ishizuka, Katherine J. ; Ricci, Lorenzo ; Tiozzo, Stefano ; Voskoboynik, Ayelet ; Dauga, Delphine. / Ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri. In: PLoS One. 2014 ; Vol. 9, No. 5.
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