Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells

Makoto Miyagishi, Hidetoshi Sumimoto, Hiroyuki Miyoshi, Yutaka Kawakami, Kazunari Taira

Research output: Contribution to journalArticle

143 Citations (Scopus)

Abstract

Background. RNA interference (RNAi) is a phenomenon in which expression of an individual gene can be specifically silenced by introducing a double-stranded RNA, one complementary to the gene, into cells. This phenomenon can be observed in mammalian cells when small interfering RNAs (siRNAs) are used, and is receiving attention as the most powerful tool for reverse genetics in the post genome era. Several groups have developed vector-based siRNA-expression systems that can induce RNAi in living cells. Methods. We describe here a comparative analysis of various siRNA-expression systems, in which we examined the effects of stem length, loop sequence and insertion of mutation(s) and/or bulges in the stem sequence on silencing effects and on the stability of the vectors. Results. As a result of the comparative analysis, we determined the following optimized siRNA-expression system: U6 promoter-driven hairpin-type dsRNA with 21-nt stem length, three to four mutations in the sense strand only, and the optimized 9-nt loop sequence, derived from microRNA. Moreover, we demonstrate that the siRNA-expression system with a tetracycline-regulated U6 promoter(s) could have the potential to control RNAi in cells, and that the HTV vector-mediated transfer of an siRNA-expression cassette into cells resulted in efficient silencing of a target gene at a multiplicity of infection as low as five. Conclusion. The mutated hairpin siRNAs and their genetically stable coding vectors could be very useful for gene knockdown experiments, and could further benefit gene therapy using RNAi.

Original languageEnglish
Pages (from-to)715-723
Number of pages9
JournalJournal of Gene Medicine
Volume6
Issue number7
DOIs
Publication statusPublished - 2004 Jul

Fingerprint

Small Interfering RNA
RNA Interference
Insertional Mutagenesis
Inverted Repeat Sequences
Gene Knockdown Techniques
Reverse Genetics
Double-Stranded RNA
Tetracycline
MicroRNAs
Genetic Therapy
Genes
Genome
Gene Expression
Mutation
Infection

Keywords

  • Gene silencing
  • HIV vector
  • RNA interference
  • Tetracycline-regulated promoter
  • U6 promoter

ASJC Scopus subject areas

  • Genetics

Cite this

Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells. / Miyagishi, Makoto; Sumimoto, Hidetoshi; Miyoshi, Hiroyuki; Kawakami, Yutaka; Taira, Kazunari.

In: Journal of Gene Medicine, Vol. 6, No. 7, 07.2004, p. 715-723.

Research output: Contribution to journalArticle

Miyagishi, Makoto ; Sumimoto, Hidetoshi ; Miyoshi, Hiroyuki ; Kawakami, Yutaka ; Taira, Kazunari. / Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells. In: Journal of Gene Medicine. 2004 ; Vol. 6, No. 7. pp. 715-723.
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