Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking

Yuki Tsukada; Yuichi Sakumura; Shin Ishii

doi:10.1007/978-3-540-69162-4_85

Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking

Yuki Tsukada, Yuichi Sakumura, Shin Ishii

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

To perform morphodynamic profiling from time lapse images of neurite outgrowth, we developed an edge evolution tracking (EET) algorithm, by which cell boundary movements including an arbitrary complex boundary transition are quantified. This algorithm enables us to estimate temporal evolution of cellular edge, and thus to trace the transition of any objective edge movements. We show advantages of EET by comparing it with the other two methods on an artificial data set that imitates neural outgrowth. We also demonstrate the usefulness of our EET by applying it to a data set of time-lapse imaging of neural outgrowth. The results show verification of quantitative profiling for arbitrary complex cell boundary movements.

Original language	English
Title of host publication	Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers
Pages	817-826
Number of pages	10
Edition	PART 2
DOIs	https://doi.org/10.1007/978-3-540-69162-4_85
Publication status	Published - 2008
Externally published	Yes
Event	14th International Conference on Neural Information Processing, ICONIP 2007 - Kitakyushu, Japan Duration: 2007 Nov 13 → 2007 Nov 16

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Number	PART 2
Volume	4985 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Other

Other	14th International Conference on Neural Information Processing, ICONIP 2007
Country/Territory	Japan
City	Kitakyushu
Period	07/11/13 → 07/11/16

ASJC Scopus subject areas

Theoretical Computer Science
Computer Science(all)

Access to Document

10.1007/978-3-540-69162-4_85

Cite this

Tsukada, Y., Sakumura, Y., & Ishii, S. (2008). Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking. In Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers (PART 2 ed., pp. 817-826). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4985 LNCS, No. PART 2). https://doi.org/10.1007/978-3-540-69162-4_85

Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking. / Tsukada, Yuki; Sakumura, Yuichi; Ishii, Shin.
Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers. PART 2. ed. 2008. p. 817-826 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4985 LNCS, No. PART 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Tsukada, Y, Sakumura, Y & Ishii, S 2008, Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking. in Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers. PART 2 edn, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), no. PART 2, vol. 4985 LNCS, pp. 817-826, 14th International Conference on Neural Information Processing, ICONIP 2007, Kitakyushu, Japan, 07/11/13. https://doi.org/10.1007/978-3-540-69162-4_85

Tsukada Y, Sakumura Y, Ishii S. Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking. In Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers. PART 2 ed. 2008. p. 817-826. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 2). doi: 10.1007/978-3-540-69162-4_85

Tsukada, Yuki ; Sakumura, Yuichi ; Ishii, Shin. / Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking. Neural Information Processing - 14th International Conference, ICONIP 2007, Revised Selected Papers. PART 2. ed. 2008. pp. 817-826 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 2).

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Quantitative morphodynamic analysis of time-Lapse imaging by edge evolution tracking

Abstract

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