TY - JOUR
T1 - Stabilizing synthetic data in the DNA of living organisms
AU - Yachie, Nozomu
AU - Ohashi, Yoshiaki
AU - Tomita, Masaru
N1 - Funding Information:
Acknowledgments We are grateful to Kazuhide Sekiyama and Junichi Sugahara for helpful discussions and Dr. Kazuharu Arakawa for useful suggestions in the preparation of the manuscript. This study was supported by research funds from Yamagata Prefecture and Tsuruoka City to Keio University and a grant from the Japan Society for the Promotion of Science (JSPS) to N. Y.
PY - 2008/6
Y1 - 2008/6
N2 - Data-encoding synthetic DNA, inserted into the genome of a living organism, is thought to be more robust than the current media. Because the living genome is duplicated and copied into new generations, one of the merits of using DNA material is long-term data storage within heritable media. A disadvantage of this approach is that encoded data can be unexpectedly broken by mutation, deletion, and insertion of DNA, which occurs naturally during evolution and prolongation, or laboratory experiments. For this reason, several information theory-based approaches have been developed as an error check of broken DNA data in order to achieve data durability. These approaches cannot efficiently recover badly damaged data- encoding DNA. We recently developed a DNA data-storage approach based on the multiple sequence alignment method to achieve a high level of data durability. In this paper, we overview this technology and discuss strategies for optimal application of this approach.
AB - Data-encoding synthetic DNA, inserted into the genome of a living organism, is thought to be more robust than the current media. Because the living genome is duplicated and copied into new generations, one of the merits of using DNA material is long-term data storage within heritable media. A disadvantage of this approach is that encoded data can be unexpectedly broken by mutation, deletion, and insertion of DNA, which occurs naturally during evolution and prolongation, or laboratory experiments. For this reason, several information theory-based approaches have been developed as an error check of broken DNA data in order to achieve data durability. These approaches cannot efficiently recover badly damaged data- encoding DNA. We recently developed a DNA data-storage approach based on the multiple sequence alignment method to achieve a high level of data durability. In this paper, we overview this technology and discuss strategies for optimal application of this approach.
KW - DNa data storage
KW - Error check
KW - Error correction
KW - Genetically modified organism (GMO)
KW - Polymerase chain reaction (PCR)
KW - Sequence alignment
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U2 - 10.1007/s11693-008-9020-5
DO - 10.1007/s11693-008-9020-5
M3 - Review article
C2 - 19083123
AN - SCOPUS:67349174820
SN - 1872-5325
VL - 2
SP - 19
EP - 25
JO - Systems and Synthetic Biology
JF - Systems and Synthetic Biology
IS - 1-2
ER -