TY - JOUR
T1 - Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery
AU - Yamada, Takahiro G.
AU - Suetsugu, Yoshitaka
AU - Deviatiiarov, Ruslan
AU - Gusev, Oleg
AU - Cornette, Richard
AU - Nesmelov, Alexander
AU - Hiroi, Noriko
AU - Kikawada, Takahiro
AU - Funahashi, Akira
N1 - Funding Information:
We are grateful to Tomoe Shiratori for maintaining the Pv11 cells and to Yuki Sato-Kikuzato for assisting with the library preparation. This research was funded by JSPS KAKENHI (Grant Numbers JP25128714, JP17H01511 and JP16K07308); the European Union’s Horizon 2020 under the Marie Skłodowska-Curie “Research and Innovation Staff Exchange (RISE)” (DRYNET; Grant No. 734434); a grant of the Agriculture, Forestry and Fisheries Research Council of the Ministry of Agriculture, Forestry and Fisheries of Japan “Pilot program of international collaborative research (Collaborative research based on a joint call with Russia)” under “Commissioned projects for promotion of strategic international collaborative research”. The library generation and sequencing was supported by Russian Science Foundation Grant “Basic research and applied research conducted by international research teams” N14-44-00002. The manuscript has been carefully checked by Ryo J. Nakatani.
Publisher Copyright:
© 2018, The Author(s).
PY - 2018/12/1
Y1 - 2018/12/1
N2 - The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes proliferation after rehydration. However, the molecular mechanisms of this desiccation tolerance remain unknown. Here, we performed high-throughput CAGE-seq of mRNA and a differentially expressed gene analysis in trehalose-treated, desiccated, and rehydrated Pv11 cells, followed by gene ontology analysis of the identified differentially expressed genes. We detected differentially expressed genes after trehalose treatment involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction that were upregulated. In the desiccation phase, L-isoaspartyl methyltransferase and heat shock proteins were upregulated and ribosomal proteins were downregulated. Analysis of differentially expressed genes during rehydration supported the notion that homologous recombination, nucleotide excision repair, and non-homologous recombination were involved in the recovery process. This study provides initial insights into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells.
AB - The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes proliferation after rehydration. However, the molecular mechanisms of this desiccation tolerance remain unknown. Here, we performed high-throughput CAGE-seq of mRNA and a differentially expressed gene analysis in trehalose-treated, desiccated, and rehydrated Pv11 cells, followed by gene ontology analysis of the identified differentially expressed genes. We detected differentially expressed genes after trehalose treatment involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction that were upregulated. In the desiccation phase, L-isoaspartyl methyltransferase and heat shock proteins were upregulated and ribosomal proteins were downregulated. Analysis of differentially expressed genes during rehydration supported the notion that homologous recombination, nucleotide excision repair, and non-homologous recombination were involved in the recovery process. This study provides initial insights into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells.
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U2 - 10.1038/s41598-018-36124-6
DO - 10.1038/s41598-018-36124-6
M3 - Article
C2 - 30560869
AN - SCOPUS:85058752275
SN - 2045-2322
VL - 8
JO - Scientific Reports
JF - Scientific Reports
IS - 1
M1 - 17941
ER -