TY - JOUR
T1 - Undesigned selection for replication termination of bacterial chromosomes
AU - Kono, Nobuaki
AU - Arakawa, Kazuharu
AU - Sato, Mitsuru
AU - Yoshikawa, Hirofumi
AU - Tomita, Masaru
AU - Itaya, Mitsuhiro
N1 - Funding Information:
We thank Naoto Ohtani, Ph.D., Takeshi Yoshizumi, Ph.D., and Mr. Keisuke Wada for critical discussions. This work was supported by Japan Society for the Promotion of Science Grant-in-Aid for Young Scientists (B) Number 14450880 ; the commission for Development of Artificial, Gene Synthesis Technology for Creating Innovative Biomaterial from the Ministry of Economy, Trade and Industry, Japan ; cooperative research grant of the Genome Research for BioResource NODAI Genome Research Center, Tokyo University of Agriculture ; and funds from the Yamagata Prefectural Government and Tsuruoka City .
PY - 2014/8/12
Y1 - 2014/8/12
N2 - The oriC DNA replication origin in bacterial chromosomes, the location of which appears to be physically identified, is genetically regulated by relevant molecular machinery. In contrast, the location of the terminus remains obscure for many bacterial replicons, except for terC, the proposed and well-studied chromosome termination site in certain bacteria. The terC locus, which is composed of specific sequences for its binding protein, is located at a site opposite from oriC, exhibiting a symmetric structure around the oriC-terC axis. Here, we investigated Bacillus subtilis 168 strains whose axes were hindered and found that the native terC function was robust. However, eradication of terminus region specific binding protein resulted in the natural terC sites not being used for termination; instead, new termini were selected at a location exactly opposite to oriC. We concluded that replication generally terminates at the loci where the two approaching replisomes meet. This site was automatically selected, and two replisomes moving at the same rate supported symmetrical chromosome structures relative to oriC. The rule, which was even validated by artificial chromosomes irrespective of oriC, should be general for replicons administered by two replisomes.
AB - The oriC DNA replication origin in bacterial chromosomes, the location of which appears to be physically identified, is genetically regulated by relevant molecular machinery. In contrast, the location of the terminus remains obscure for many bacterial replicons, except for terC, the proposed and well-studied chromosome termination site in certain bacteria. The terC locus, which is composed of specific sequences for its binding protein, is located at a site opposite from oriC, exhibiting a symmetric structure around the oriC-terC axis. Here, we investigated Bacillus subtilis 168 strains whose axes were hindered and found that the native terC function was robust. However, eradication of terminus region specific binding protein resulted in the natural terC sites not being used for termination; instead, new termini were selected at a location exactly opposite to oriC. We concluded that replication generally terminates at the loci where the two approaching replisomes meet. This site was automatically selected, and two replisomes moving at the same rate supported symmetrical chromosome structures relative to oriC. The rule, which was even validated by artificial chromosomes irrespective of oriC, should be general for replicons administered by two replisomes.
KW - Bacillus subtilis
KW - circular chromosome
KW - genomic structure
KW - high-throughput sequencing
KW - replication terminus
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U2 - 10.1016/j.jmb.2014.06.005
DO - 10.1016/j.jmb.2014.06.005
M3 - Article
C2 - 24946150
AN - SCOPUS:84904742106
SN - 0022-2836
VL - 426
SP - 2918
EP - 2927
JO - Journal of Molecular Biology
JF - Journal of Molecular Biology
IS - 16
ER -