生命情報学科

研究成果

2013

Treatment effectiveness of brain-computer interface training for patients with focal hand dystonia: A double-case study

Hashimoto, Y., Ota, T., Mukaino, M. & Ushiba, J., 2013 10 31, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 273-276 4 p. 6609490. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

研究成果: Conference contribution

1 引用 (Scopus)

Use of a cane for recovery from backward balance loss during treadmill walking

Hyodo, M., Saito, M., Ushiba, J., Tomita, Y. & Masakado, Y., 2013 6 1, : : Somatosensory and Motor Research. 30, 2, p. 65-71 7 p.

研究成果: Article

1 引用 (Scopus)
2012

A chemical genomic study identifying diversity in cell migration signaling in cancer cells

Magi, S., Tashiro, E. & Imoto, M., 2012 11 22, : : Scientific reports. 2, 823.

研究成果: Article

7 引用 (Scopus)

An Anilinoquinazoline Derivative Inhibits Tumor Growth through Interaction with hCAP-G2, a Subunit of Condensin II

Shiheido, H., Naito, Y., Kimura, H., Genma, H., Takashima, H., Tokunaga, M., Ono, T., Hirano, T., Du, W., Yamada, T., Doi, N., Iijima, S., Hattori, Y. & Yanagawa, H., 2012 9 13, : : PloS one. 7, 9, e44889.

研究成果: Article

10 引用 (Scopus)

Anticipatory postural adjustments contribute to age-related changes in compensatory steps associated with unilateral perturbations

Hyodo, M., Saito, M., Ushiba, J., Tomita, Y., Minami, M. & Masakado, Y., 2012 7 1, : : Gait and Posture. 36, 3, p. 625-630 6 p.

研究成果: Article

10 引用 (Scopus)

Antitumor effects of novel highly hydrophilic and non-ATP-competitive MEK1/2 inhibitor, SMK-17

Kiga, M., Tanzawa, F., Iwasaki, S., Inaba, F., Fujiwara, K., Iwadare, H., Echigo, T., Nakamura, Y., Shibata, T., Suzuki, K., Yasumatsu, I., Nakayama, A., Sasazawa, Y., Tashiro, E., Imoto, M. & Kurakata, S., 2012 1 1, : : Anti-Cancer Drugs. 23, 1, p. 119-130 12 p.

研究成果: Article

2 引用 (Scopus)

A phthalimide derivative that inhibits centrosomal clustering is effective on multiple myeloma

Shiheido, H., Terada, F., Tabata, N., Hayakawa, I., Matsumura, N., Takashima, H., Ogawa, Y., Du, W., Yamada, T., Shoji, M., Sugai, T., Doi, N., Iijima, S., Hattori, Y. & Yanagawa, H., 2012 6 25, : : PloS one. 7, 6, e38878.

研究成果: Article

22 引用 (Scopus)

A pilot study of contralateral homonymous muscle activity simulated electrical stimulation in chronic hemiplegia

Osu, R., Otaka, Y., Ushiba, J., Sakata, S., Yamaguchi, T., Fujiwara, T., Kondo, K. & Liu, M., 2012 8, : : Brain Injury. 26, 9, p. 1105-1112 8 p.

研究成果: Article

5 引用 (Scopus)

Bacterial computing and molecular communication

Sakakibara, Y. & Hiyama, S., 2012 1 1, Handbook of Natural Computing. Springer Berlin Heidelberg, 巻 3-4. p. 1204-1232 29 p.

研究成果: Chapter

Brain insulin resistance accelerates Aβ fibrillogenesis by inducing GM1 ganglioside clustering in the presynaptic membranes

Yamamoto, N., Matsubara, T., Sobue, K., Tanida, M., Kasahara, R., Naruse, K., Taniura, H., Sato, T. & Suzuki, K., 2012 5 1, : : Journal of Neurochemistry. 121, 4, p. 619-628 10 p.

研究成果: Article

30 引用 (Scopus)
6 引用 (Scopus)

Calcium regulates caveolin-1 expression at the transcriptional level

Yang, X. Y., Huang, C. C., Kan, Q. M., Li, Y., Liu, D., Zhang, X. C., Sato, T., Yamagata, S. & Yamagata, T., 2012 9 28, : : Biochemical and Biophysical Research Communications. 426, 3, p. 334-341 8 p.

研究成果: Article

6 引用 (Scopus)
4 引用 (Scopus)

Cell-Sized confinement in microspheres accelerates the reaction of gene expression

Kato, A., Yanagisawa, M., Sato, Y. T., Fujiwara, K. & Yoshikawa, K., 2012 4 19, : : Scientific reports. 2, 283.

研究成果: Article

50 引用 (Scopus)

Chiral-substrate-assisted stereoselective epoxidation catalyzed by H 2O 2-dependent cytochrome P450 SPα

Fujishiro, T., Shoji, O., Kawakami, N., Watanabe, T., Sugimoto, H., Shiro, Y. & Watanabe, Y., 2012 10, : : Chemistry - An Asian Journal. 7, 10, p. 2286-2293 8 p.

研究成果: Article

18 引用 (Scopus)

Comprehensive predictions of target proteins based on protein-chemical interaction using virtual screening and experimental verifications

Kobayashi, H., Harada, H., Nakamura, M., Futamura, Y., Ito, A., Yoshida, M., Iemura, S. I., Shin-Ya, K., Doi, T., Takahashi, T., Natsume, T., Imoto, M. & Sakakibara, Y., 2012 6 19, : : BMC Chemical Biology. 12, 2.

研究成果: Article

6 引用 (Scopus)

Construction of a metagenomic library for the marine sponge Halichondria okadai

Abe, T., Sahin, F. P., Akiyama, K., Naito, T., Kishigami, M., Miyamoto, K., Sakakibara, Y. & Uemura, D., 2012, : : Bioscience, Biotechnology and Biochemistry. 76, 4, p. 633-639 7 p.

研究成果: Article

10 引用 (Scopus)

Contraction level-related modulation of corticomuscular coherence differs between the tibialis anterior and soleus muscles in humans

Ushiyama, J., Masakado, Y., Fujiwara, T., Tsuji, T., Hase, K., Kimura, A., Liu, M. & Ushiba, J., 2012 4 15, : : Journal of Applied Physiology. 112, 8, p. 1258-1267 10 p.

研究成果: Article

30 引用 (Scopus)

COPICAT: A software system for predicting interactions between proteins and chemical compounds

Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T. & Sato, K., 2012 3 1, : : Bioinformatics. 28, 5, p. 745-746 2 p., bts031.

研究成果: Article

11 引用 (Scopus)

DAFS: Simultaneous aligning and folding of RNA sequences via dual decomposition

Sato, K., Kato, Y., Akutsu, T., Asai, K. & Sakakibara, Y., 2012 12 1, : : Bioinformatics. 28, 24, p. 3218-3224 7 p.

研究成果: Article

18 引用 (Scopus)

DNA display selection of peptide ligands for a full-length human G protein-coupled receptor on CHO-K1 cells

Doi, N., Yamakawa, N., Matsumoto, H., Yamamoto, Y., Nagano, T., Matsumura, N., Horisawa, K. & Yanagawa, H., 2012 1 10, : : PloS one. 7, 1, e30084.

研究成果: Article

4 引用 (Scopus)

Drpiwi-1 is essential for germline cell formation during sexualization of the planarian Dugesia ryukyuensis

Nakagawa, H., Ishizu, H., Hasegawa, R., Kobayashi, K. & Matsumoto, M., 2012 1 1, : : Developmental Biology. 361, 1, p. 167-176 10 p.

研究成果: Article

18 引用 (Scopus)

Efficiency of Go/No-Go task performance implemented in the left Hemisphere

Hirose, S., Chikazoe, J., Watanabe, T., Jimura, K., Kunimatsu, A., Abe, O., Ohtomo, K., Miyashita, Y. & Konishi, S., 2012 6 27, : : Journal of Neuroscience. 32, 26, p. 9059-9065 7 p.

研究成果: Article

50 引用 (Scopus)

Erratum: Generation of 'Unnatural Natural Product' library and identification of a small molecule inhibitor of XIAP (Bioorganic and Medicinal Chemistry (2011) 19 (4377-4385))

Kawamura, T., Matsubara, K., Otaka, H., Tashiro, E., Shindo, K., Yanagita, R. C., Irie, K. & Imoto, M., 2012 4 1, : : Bioorganic and Medicinal Chemistry. 20, 7, 1 p.

研究成果: Comment/debate

1 引用 (Scopus)

From microscopy data to in silico environments for in vivo-oriented simulations

Hiroi, N., Klann, M., Iba, K., Heras Ciechomski, P. D., Yamashita, S., Tabira, A., Okuhara, T., Kubojima, T., Okada, Y., Oka, K., Mange, R., Unger, M., Funahashi, A. & Koeppl, H., 2012, : : Eurasip Journal on Bioinformatics and Systems Biology. 2012, 1, 7.

研究成果: Article

5 引用 (Scopus)

Glycosylation of Nα-lauryl-O-(β-d-xylopyranosyl)-l- serinamide as a saccharide primer in cells

Wang, Y., Kumazawa, T., Shiba, K., Osumi, K., Mizuno, M. & Sato, T., 2012 11 1, : : Carbohydrate Research. 361, p. 33-40 8 p.

研究成果: Article

5 引用 (Scopus)

Identification of Toyocamycin, an agent cytotoxic for multiple myeloma cells, as a potent inhibitor of ER stress-induced XBP1 mRNA splicing

Ri, M., Tashiro, E., Oikawa, D., Shinjo, S., Tokuda, M., Yokouchi, Y., Narita, T., Masaki, A., Ito, A., Ding, J., Kusumoto, S., Ishida, T., Komatsu, H., Shiotsu, Y., Ueda, R., Iwawaki, T., Imoto, M. & Iida, S., 2012 7, : : Blood cancer journal. 2, 7, e79.

研究成果: Article

91 引用 (Scopus)

Inostamycin enhanced TRAIL-induced apoptosis through DR5 upregulation on the cell surface

Yamamoto, K., Makino, M., Watanapokasin, R., Tashiro, E. & Imoto, M., 2012 6 1, : : Journal of Antibiotics. 65, 6, p. 295-300 6 p.

研究成果: Article

4 引用 (Scopus)

Intricate recognition of glycolipid-like compounds by HIV-1 envelope proteins evaluated with surface plasmon resonance imaging

Okada, T., Kimura, A., Miura, H., Nishiyama, T., Mori, M., Suzuki, J., Ogiso, M., Matsuoka, K., Sato, T., Hatanaka, K. & Minoura, N., 2012 9 1, : : Journal of Carbohydrate Chemistry. 31, 7, p. 584-592 9 p.

研究成果: Article

1 引用 (Scopus)

In vitro selection of fab fragments by mRNA display and gene-linking emulsion PCR

Sumida, T., Yanagawa, H. & Doi, N., 2012 11 7, : : Journal of Nucleic Acids. 2012, 371379.

研究成果: Article

19 引用 (Scopus)

Isolation of 9-hydroxy-10E,12Z-octadecadienoic acid, an inhibitor of fat accumulation from Valeriana fauriei

Yuki, K., Ikeda, M., Miyamoto, K., Ohno, O., Yamada, K. & Uemura, D., 2012 6 29, : : Bioscience, Biotechnology and Biochemistry. 76, 6, p. 1233-1235 3 p.

研究成果: Article

5 引用 (Scopus)
7 引用 (Scopus)

MetaVelvet: An extension of Velvet assembler to de novo metagenome assembly from short sequence reads

Namiki, T., Hachiya, T., Tanaka, H. & Sakakibara, Y., 2012 11 1, : : Nucleic acids research. 40, 20, p. e155

研究成果: Article

345 引用 (Scopus)
39 引用 (Scopus)

Napyradiomycin A1, an inhibitor of mitochondrial complexes i and II

Yamamoto, K., Tashiro, E., Motohashi, K., Seto, H. & Imoto, M., 2012 4 1, : : Journal of Antibiotics. 65, 4, p. 211-214 4 p.

研究成果: Article

3 引用 (Scopus)

Newer challenges to restore hemiparetic upper extremity after stroke: HANDS therapy and BMI neurorehabilitation

Liu, M., Fujiwara, T., Shindo, K., Kasashima, Y., Otaka, Y., Tsuji, T. & Ushiba, J., 2012 12 1, : : Hong Kong Physiotherapy Journal. 30, 2, p. 83-92 10 p.

研究成果: Article

9 引用 (Scopus)

Physiological intracellular crowdedness is defined by the perimeter-to-area ratio of sub-cellular compartments

Hiroi, N., Okuhara, T., Kubojima, T., Iba, K., Tabira, A., Yamashita, S., Okada, Y., Kobayashi, T. J. & Funahashi, A., 2012 9 25, : : Frontiers in Physiology. 3 JUL, Article 293.

研究成果: Article

1 引用 (Scopus)

Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences

Tagami, T., Hachiya, T. & Sakakibara, Y., 2012 5 8, 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 6182660. (2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012).

研究成果: Conference contribution

19 引用 (Scopus)
3 引用 (Scopus)

Rtips: Fast and accurate tools for RNA 2D structure prediction using integer programming

Kato, Y., Sato, K., Asai, K. & Akutsu, T., 2012 7, : : Nucleic acids research. 40, W1, p. W29-W34

研究成果: Article

7 引用 (Scopus)

SAMSCOPE: An opengl-based real-time interactive scale-free SAM viewer

Popendorf, K. & Sakakibara, Y., 2012 5 1, : : Bioinformatics. 28, 9, p. 1276-1277 2 p., bts122.

研究成果: Article

6 引用 (Scopus)

Software support for SBGN maps: SBGN-ML and LibSBGN

Van Iersel, M. P., Villéger, A. C., Czauderna, T., Boyd, S. E., Bergmann, F. T., Luna, A., Demir, E., Sorokin, A., Dogrusoz, U., Matsuoka, Y., Funahashi, A., Aladjem, M. I., Mi, H., Moodie, S. L., Kitano, H., Le novère, N. & Schreiber, F., 2012 8, : : Bioinformatics. 28, 15, p. 2016-2021 6 p., bts270.

研究成果: Article

46 引用 (Scopus)

Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds

Horita, H., Kobayashi, M., Liu, W. C., Oka, K., Jarvis, E. D. & Wada, K., 2012 8 2, : : PloS one. 7, 8, e42173.

研究成果: Article

25 引用 (Scopus)
5 引用 (Scopus)
5 引用 (Scopus)
14 引用 (Scopus)

Synthesis and assignment of the absolute configuration of indenotryptoline bisindole alkaloid BE-54017

Kimura, T., Kanagaki, S., Matsui, Y., Imoto, M., Watanabe, T. & Shibasaki, M., 2012 9 7, : : Organic Letters. 14, 17, p. 4418-4421 4 p.

研究成果: Article

25 引用 (Scopus)

Target identification of bioactive compounds

Tashiro, E. & Imoto, M., 2012 3 15, : : Bioorganic and Medicinal Chemistry. 20, 6, p. 1910-1921 12 p.

研究成果: Article

21 引用 (Scopus)