生命情報学科

研究成果

2010

Brain-machine interface - Current status and future prospects

Ushiba, J., 2010 2 1, : : Brain and Nerve. 62, 2, p. 101-111 11 p.

研究成果: Article

8 引用 (Scopus)
33 引用 (Scopus)

Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences

Shang, W. H., Hori, T., Toyoda, A., Kato, J., Popendorf, K., Sakakibara, Y., Fujiyama, A. & Fukagawa, T., 2010 9 1, : : Genome Research. 20, 9, p. 1219-1228 10 p.

研究成果: Article

94 引用 (Scopus)

Comparative characterization of random-sequence proteins consisting of 5, 12, and 20 kinds of amino acids

Tanaka, J., Doi, N., Takashima, H. & Yanagawa, H., 2010 4 1, : : Protein Science. 19, 4, p. 786-795 10 p.

研究成果: Article

21 引用 (Scopus)

Construction of a genetic AND gate under a new standard for assembly of genetic parts

Ayukawa, S., Kobayashi, A., Nakashima, Y., Takagi, H., Hamada, S., Uchiyama, M., Yugi, K., Murata, S., Sakakibara, Y., Hagiya, M., Yamamura, M. & Kiga, D., 2010 12 2, : : BMC Genomics. 11, SUPPL. 4, S16.

研究成果: Article

10 引用 (Scopus)

Correlation between EEG-EMG coherence during isometric contraction and its imaginary execution

Hashimoto, Y., Ushiba, J., Kimura, A., Liu, M. & Tomita, Y., 2010 5 18, : : Acta Neurobiologiae Experimentalis. 70, 1, p. 76-85 10 p.

研究成果: Article

36 引用 (Scopus)

Development of a bacteria computer: From in silico finite automata to in vitro and in vivo

Sakakibara, Y., 2010 7 29, Programs, Proofs, Processes - 6th Conference on Computability in Europe, CiE 2010, Proceedings. p. 362-371 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 巻数 6158 LNCS).

研究成果: Conference contribution

Distinct subcellular localization in the cytosol and apicoplast, unexpected dimerization and inhibition of Plasmodium falciparum glyoxalases

Urscher, M., Przyborski, J. M., Imoto, M. & Deponte, M., 2010 4, : : Molecular Microbiology. 76, 1, p. 92-103 12 p.

研究成果: Article

25 引用 (Scopus)

Distribution and structural diversity of cilia in tadpole larvae of the ascidian Ciona intestinalis

Konno, A., Kaizu, M., Hotta, K., Horie, T., Sasakura, Y., Ikeo, K. & Inaba, K., 2010 1 1, : : Developmental Biology. 337, 1, p. 42-62 21 p.

研究成果: Article

18 引用 (Scopus)
27 引用 (Scopus)
63 引用 (Scopus)

Ganglioside GD1a suppression of NOS2 expression via ERK1 pathway in mouse osteosarcoma FBJ cells

Cao, T., Zhang, T., Wang, L., Zhang, L., Adachi, T., Sato, T., Yamagata, S. & Yamagata, T., 2010 8 1, : : Journal of Cellular Biochemistry. 110, 5, p. 1165-1174 10 p.

研究成果: Article

4 引用 (Scopus)

Glutamate-induced calcium increase mediates magnesium release from mitochondria in rat hippocampal neurons

Shindo, Y., Fujimoto, A., Hotta, K., Suzuki, K. & Oka, K., 2010 11 1, : : Journal of neuroscience research. 88, 14, p. 3125-3132 8 p.

研究成果: Article

23 引用 (Scopus)

Glyoxalase-I is a novel target against Bcr-Abl leukemic cells acquiring stem-like characteristics in a hypoxic environment

Takeuchi, M., Kimura, S., Kuroda, J., Ashihara, E., Kawatani, M., Osada, H., Umezawa, K., Yasui, E., Imoto, M., Tsuruo, T., Yokota, A., Tanaka, R., Nagao, R., Nakahata, T., Fujiyama, Y. & Maekawa, T., 2010 7, : : Cell Death and Differentiation. 17, 7, p. 1211-1220 10 p.

研究成果: Article

34 引用 (Scopus)

Improvement of structure conservation index with centroid estimators

Okada, Y., Sato, K. & Sakakibara, Y., 2010 12 1, Pacific Symposium on Biocomputing 2010, PSB 2010. p. 88-97 10 p. (Pacific Symposium on Biocomputing 2010, PSB 2010).

研究成果: Conference contribution

3 引用 (Scopus)

Inhibitory effects of bakuchiol, bavachin, and isobavachalcone isolated from piper longum on melanin production in b16 mouse melanoma cells

Ohno, O., Watabe, T., Nakamura, K., Kawagoshi, M., Uotsu, N., Chiba, T., Yamada, M., Yamaguchi, K., Yamada, K., Miyamoto, K. & Uemura, D., 2010 8 9, : : Bioscience, Biotechnology and Biochemistry. 74, 7, p. 1504-1506 3 p.

研究成果: Article

27 引用 (Scopus)

Isolation and structure elucidation of a novel androgen antagonist, arabilin, produced by Streptomyces sp. MK756-CF1

Kawamura, T., Fujimaki, T., Hamanaka, N., Torii, K., Kobayashi, H., Takahashi, Y., Igarashi, M., Kinoshita, N., Nishimura, Y., Tashiro, E. & Imoto, M., 2010 10 1, : : Journal of Antibiotics. 63, 10, p. 601-605 5 p.

研究成果: Article

15 引用 (Scopus)

Mesenchyme cells can function to induce epithelial cell proliferation in starfish embryos

Hamanaka, G., Matsumoto, M., Imoto, M. & Kaneko, H., 2010 3 1, : : Developmental Dynamics. 239, 3, p. 818-827 10 p.

研究成果: Article

2 引用 (Scopus)

Metabolomic identification of the target of the filopodia protrusion inhibitor glucopiericidin A

Kitagawa, M., Ikeda, S., Tashiro, E., Soga, T. & Imoto, M., 2010 9 24, : : Chemistry and Biology. 17, 9, p. 989-998 10 p.

研究成果: Article

29 引用 (Scopus)

Modulation of mu rhythm desynchronization during motor imagery by transcranial direct current stimulation

Matsumoto, J., Fujiwara, T., Takahashi, O., Liu, M., Kimura, A. & Ushiba, J., 2010 6 15, : : Journal of neuroengineering and rehabilitation. 7, 1, 27.

研究成果: Article

68 引用 (Scopus)
13 引用 (Scopus)

mRNA display selection of a high-affinity, Bcl-XL-specific binding peptide

Matsumura, N., Tsuji, T., Sumida, T., Kokubo, M., Onimaru, M., Doi, N., Takashima, H., Miyamoto-Sato, E. & Yanagawa, H., 2010 7 1, : : FASEB Journal. 24, 7, p. 2201-2210 10 p.

研究成果: Article

11 引用 (Scopus)

Murasaki: A fast, parallelizable algorithm to find anchors from multiple genomes

Popendorf, K., Tsuyoshi, H., Osana, Y. & Sakakibara, Y., 2010, : : PloS one. 5, 9, e12651.

研究成果: Article

16 引用 (Scopus)
61 引用 (Scopus)

Network structure of projections extending from peripheral neurons in the tunic of ascidian larva

Terakubo, H. Q., Nakajima, Y., Sasakura, Y., Horie, T., Konno, A., Takahashi, H., Inaba, K., Hotta, K. & Oka, K., 2010 8 1, : : Developmental Dynamics. 239, 8, p. 2278-2287 10 p.

研究成果: Article

10 引用 (Scopus)

Neural substrate of sound duration discrimination during an auditory sequence in the guinea pig primary auditory cortex

Okazaki, S., Kanoh, S., Tsukada, M. & Oka, K., 2010 1 1, : : Hearing Research. 259, 1-2, p. 107-116 10 p.

研究成果: Article

3 引用 (Scopus)

Neuroblastoma cells can be classified according to glycosphingolipid expression profiles identified by liquid chromatography-tandem mass spectrometry

Kaneko, T., Okita, H., Nakajima, H., Iijima, K., Ogasawara, N. A. O., Miyagawa, Y., Katagiri, Y. U., Nakagawa, A., Kiyokawa, N., Sato, T. & Fujimoto, J., 2010 11 1, : : International journal of oncology. 37, 5, p. 1279-1288 10 p.

研究成果: Article

3 引用 (Scopus)

Operon structure optimization by random self-assembly

Nakagawa, Y., Yugi, K., Tsuge, K., Itaya, M., Yanagawa, H. & Sakakibara, Y., 2010 1 1, : : Natural Computing. 9, 1, p. 173-181 9 p.

研究成果: Article

2 引用 (Scopus)

Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos

Takahashi, H., Hotta, K., Takagi, C., Ueno, N., Satoh, N. & Shoguchi, E., 2010 2 1, : : Zoological Science. 27, 2, p. 110-118 9 p.

研究成果: Article

7 引用 (Scopus)
1 引用 (Scopus)

Sialic acid-mimic peptides as hemagglutinin inhibitors for anti-influenza therapy

Matsubara, T., Onishi, A., Saito, T., Shimada, A., Inoue, H., Taki, T., Nagata, K., Okahata, Y. & Sato, T., 2010 6 10, : : Journal of Medicinal Chemistry. 53, 11, p. 4441-4449 9 p.

研究成果: Article

73 引用 (Scopus)

Studies on function of MC5 molecule that is a novel membrane-type metalloproteinase of astacin family during morphogenesis of the starfish, Asterina pectinifera

Hamanaka, G., Matsumoto, M., Hoshi, M. & Kaneko, H., 2010 12 1, Echinoderms: Durham - Proceedings of the 12th International Echinoderm Conference. p. 457-462 6 p. (Echinoderms: Durham - Proceedings of the 12th International Echinoderm Conference).

研究成果: Conference contribution

3 引用 (Scopus)

Terpenoids produced by actinomycetes: Isolation, structural elucidation and biosynthesis of new diterpenes, gifhornenolones A and B from Verrucosispora gifhornensis YM28-088

Shirai, M., Okuda, M., Motohashi, K., Imoto, M., Furihata, K., Matsuo, Y., Katsuta, A., Shizuri, Y. & Seto, H., 2010 5 1, : : Journal of Antibiotics. 63, 5, p. 245-250 6 p.

研究成果: Article

41 引用 (Scopus)

The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program

Tassy, O., Dauga, D., Daian, F., Sobral, D., Robin, F., Khoueiry, P., Salgado, D., Fox, V., Caillol, D., Schiappa, R., Laporte, B., Rios, A., Luxardi, G., Kusakabe, T., Joly, J. S., Darras, S., Christiaen, L., Contensin, M., Auger, H., Lamy, C. および9人, Hudson, C., Rothbächer, U., Gilchrist, M. J., Makabe, K. W., Hotta, K., Fujiwara, S., Satoh, N., Satou, Y. & Lemaire, P., 2010 10, : : Genome Research. 20, 10, p. 1459-1468 10 p.

研究成果: Article

81 引用 (Scopus)

The DBCLS BioHackathon: Standardization and interoperability for bioinformatics web services and workflows

Katayama, T., Arakawa, K., Nakao, M., Ono, K., Aoki-Kinoshita, K. F., Yamamoto, Y., Yamaguchi, A., Kawashima, S., Chun, H. W., Aerts, J., Aranda, B., Barboza, L. H., Bonnal, R. J. P., Bruskiewich, R., Bryne, J. C., Fernández, J. M., Funahashi, A., Gordon, P. M. K., Goto, N., Groscurth, A. および37人, Gutteridge, A., Holland, R., Kano, Y., Kawas, E. A., Kerhornou, A., Kibukawa, E., Kinjo, A. R., Kuhn, M., Lapp, H., Lehvaslaiho, H., Nakamura, H., Nakamura, Y., Nishizawa, T., Nobata, C., Noguchi, T., Oinn, T. M., Okamoto, S., Owen, S., Pafilis, E., Pocock, M., Prins, P., Ranzinger, R., Reisinger, F., Salwinski, L., Schreiber, M., Senger, M., Shigemoto, Y., Standley, D. M., Sugawara, H., Tashiro, T., Trelles, O., Vos, R. A., Wilkinson, M. D., York, W., Zmasek, C. M., Asai, K. & Takagi, T., 2010 8 21, : : Journal of Biomedical Semantics. 1, 8.

研究成果: Review article

21 引用 (Scopus)

Total synthesis of incednam, the aglycon of incednine

Ohtani, T., Tsukamoto, S., Kanda, H., Misawa, K., Urakawa, Y., Fujimaki, T., Imoto, M., Takahashi, Y., Takahashi, D. & Toshima, K., 2010 11 5, : : Organic Letters. 12, 21, p. 5068-5071 4 p.

研究成果: Article

18 引用 (Scopus)

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data

Nishito, Y., Osana, Y., Hachiya, T., Popendorf, K., Toyoda, A., Fujiyama, A., Itaya, M. & Sakakibara, Y., 2010 4 16, : : BMC Genomics. 11, 1, 243.

研究成果: Article

64 引用 (Scopus)
2009
4 引用 (Scopus)

Accurate identification of orthologous segments among multiple genomes

Hachiya, T., Osana, Y., Popendorf, K. & Sakakibara, Y., 2009 4 7, : : Bioinformatics. 25, 7, p. 853-860 8 p.

研究成果: Article

24 引用 (Scopus)

A modular approach to heterogeneous biochemical model simulation on an FPGA

Yamada, H., Osana, Y., Ishimori, T., Ooya, T., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N., Amano, H., Shibata, Y. & Oguri, K., 2009 12 1, ReConFig'09 - 2009 International Conference on ReConFigurable Computing and FPGAs. p. 125-130 6 p. 5382039. (ReConFig'09 - 2009 International Conference on ReConFigurable Computing and FPGAs).

研究成果: Conference contribution

1 引用 (Scopus)

Anomalous exciton spectra of laser-driven semiconductor superlattices

Yashima, K., Oka, K., Hino, K. I., Maeshima, N. & Tong, X. M., 2009 6, : : Solid State Communications. 149, 21-22, p. 823-826 4 p.

研究成果: Article

3 引用 (Scopus)

A non-parametric bayesian approach for predicting RNA secondary structures

Sato, K., Hamada, M., Mituyama, T., Asai, K. & Sakakibara, Y., 2009 11 2, Algorithms in Bioinformatics - 9th International Workshop, WABI 2009, Proceedings. p. 286-297 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 巻数 5724 LNBI).

研究成果: Conference contribution

1 引用 (Scopus)

A novel vanadium reductase, Vanabin2, forms a possible cascade involved in electron transfer

Kawakami, N., Ueki, T., Amata, Y., Kanamori, K., Matsuo, K., Gekko, K. & Michibata, H., 2009 4, : : Biochimica et Biophysica Acta - Proteins and Proteomics. 1794, 4, p. 674-679 6 p.

研究成果: Article

33 引用 (Scopus)

Bicistronic DNA display for in vitro selection of Fab fragments

Sumida, T., Doi, N. & Yanagawa, H., 2009 9 29, : : Nucleic acids research. 37, 22, p. e147-e147 gkp776.

研究成果: Article

18 引用 (Scopus)

Cell-based in vivo dual imaging probes using genetically expressed tags and chemical contrast agents

Hasegawa, Y., Honda, A., Umezawa, K., Niino, Y., Oka, K., Chiba, T., Aiso, S., Tanimoto, A., Citterio, D. & Suzuki, K., 2009, : : Chemical Communications. 27, p. 4040-4042 3 p.

研究成果: Article

2 引用 (Scopus)
85 引用 (Scopus)

Chemical Biology of Cell Motility Inhibitors

Kawamura, T., Kitagawa, M. & Imoto, M., 2009 8 24, Protein Targeting with Small Molecules: Chemical Biology Techniques and Applications. John Wiley and Sons, p. 169-187 19 p.

研究成果: Chapter

1 引用 (Scopus)

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

Ooya, T., Yamada, H., Ishimori, T., Shibata, Y., Osana, Y., Oguri, K., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N. & Amano, H., 2009 11 25, FPL 09: 19th International Conference on Field Programmable Logic and Applications. p. 679-682 4 p. 5272335. (FPL 09: 19th International Conference on Field Programmable Logic and Applications).

研究成果: Conference contribution

2 引用 (Scopus)

Dextran Coated Gadolinium Phosphate Nanoparticles for Magnetic Resonance Tumor Imaging

Hifumi, H., Yamaoka, S., Tanimoto, A., Akatsu, T., Shindo, Y., Honda, A., Citterio, D., Oka, K., Kuribayashi, S. & Suzuki, K., 2009 9 1, : : Journal of Materials Chemistry. 19, 35, p. 6393-6399 7 p.

研究成果: Article

62 引用 (Scopus)
5 引用 (Scopus)