• 2607 引用
  • 17 h指数
19962020

年単位の研究成果

Pureに変更を加えた場合、すぐここに表示されます。

研究成果

Conference contribution

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

Ooya, T., Yamada, H., Ishimori, T., Shibata, Y., Osana, Y., Oguri, K., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N. & Amano, H., 2009 11 25, FPL 09: 19th International Conference on Field Programmable Logic and Applications. p. 679-682 4 p. 5272335. (FPL 09: 19th International Conference on Field Programmable Logic and Applications).

研究成果: Conference contribution

2 引用 (Scopus)

Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA

Iwanagra, N., Shibata, Y., Yoshimi, M., Osana, Y., Iwaoka, Y., Fukushima, T., Amano, H., Funahashi, A., Hiroi, N., Kitano, H. & Oguri, K., 2005 12 1, Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL. p. 666-669 4 p. 1515809. (Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL; 巻数 2005).

研究成果: Conference contribution

10 引用 (Scopus)

Fabrication method to a high resolution control in the space of cell culturing environment with microfluidic system

Hiraiwa, T., Kimura, T., Takenaka, Y., Tanamoto, R., Ota, H., Kimura, H., Taguchi, Y., Miki, N., Matsumoto, Y., Oka, K., Funahashi, A. & Hiroi, N., 2014 1 1, MEMS 2014 - 27th IEEE International Conference on Micro Electro Mechanical Systems. Institute of Electrical and Electronics Engineers Inc., p. 264-267 4 p. 6765626. (Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS)).

研究成果: Conference contribution

FPGA implementation of a data-driven stochastic biochemical simulator with the next reaction method

Yoshimi, M., Iwaoka, Y., Nishikawa, Y., Kojima, T., Osana, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Yamada, H., Kitano, H. & Amano, H., 2007 12 1, Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL. p. 254-259 6 p. 4380656. (Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL).

研究成果: Conference contribution

14 引用 (Scopus)

In vivo oriented modeling with consideration of intracellular crowding

Hiroi, N., Iba, K., Tabira, A., Okuhara, T., Kubojima, T., Hiraiwa, T., Kobayashi, T. J., Oka, K. & Funahashi, A., 2013 10 31, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 2716-2719 4 p. 6610101. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

研究成果: Conference contribution

1 引用 (Scopus)

L-turn routing: An adaptive routing in irregular networks

Koibuchi, M., Funahashi, A., Jouraku, A. & Amano, H., 2001, Proceedings of the International Conference on Parallel Processing. Institute of Electrical and Electronics Engineers Inc., 巻 2001-January. p. 383-392 10 p. 952084

研究成果: Conference contribution

48 引用 (Scopus)

Performance evaluation of an FPGA-based biochemical simulator ReCSiP

Osana, Y., Yoshimi, M., Iwaoka, Y., Kojima, T., Nishikawa, Y., Funahashi, A., Hiroi, N., Kitano, H., Amano, H., Shibata, Y. & Iwanaga, N., 2006 12 1, Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL. p. 845-850 6 p. 4101089. (Proceedings - 2006 International Conference on Field Programmable Logic and Applications, FPL).

研究成果: Conference contribution

4 引用 (Scopus)

Practical implementation of a network-based Stochastic biochemical simulation system on an FPGA

Yoshimi, M., Nishikawa, Y., Osana, Y., Funahashi, A., Hiroi, N., Shibata, Y., Yamada, H., Kitano, H. & Amano, H., 2008 11 3, Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL. p. 663-666 4 p. 4630034. (Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL).

研究成果: Conference contribution

5 引用 (Scopus)

Requirement of spatiotemporal resolution for imaging intracellular temperature distribution

Hiroi, N., Tanimoto, R., Ii, K., Ozeki, M., Mashimo, K. & Funahashi, A., 2017, Biomedical Imaging and Sensing Conference. SPIE, 巻 10251. 102510Q

研究成果: Conference contribution

Routing algorithms based on 2D turn model for irregular networks

Jouraku, A., Koibuchi, M., Amano, H. & Funahashi, A., 2002 1 1, Proceedings - International Symposium on Parallel Architectures, Algorithms and Networks, I-SPAN 2002. Hsu, D. F., Saldana, R. P. & Ibarra, O. H. (版). IEEE Computer Society, p. 289-294 6 p. 1004296. (Proceedings of the International Symposium on Parallel Architectures, Algorithms and Networks, I-SPAN; 巻数 2002-January).

研究成果: Conference contribution

13 引用 (Scopus)

The design of scalable stochastic biochemical simulator on FPGA

Yoshimi, M., Osana, Y., Iwaoka, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H. & Amano, H., 2005 12 1, Proceedings - 2005 IEEE International Conference on Field Programmable Technology. p. 339-340 2 p. 1568590. (Proceedings - 2005 IEEE International Conference on Field Programmable Technology; 巻数 2005).

研究成果: Conference contribution

6 引用 (Scopus)
Editorial

Editorial: Quantitative biology: Dynamics of living systems

Hiroi, N., Draviam, V. M. & Funahashi, A., 2016 6 2, : : Frontiers in Physiology. 7, JUN, 196.

研究成果: Editorial

1 引用 (Scopus)

Meeting report of the international workshop on quantitative biology 2012: Mesoscopic and microscopic worlds meet

Draviam, V. M., Funahashi, A., Hiroi, N., Kimura, A. & Kobayashi, T. J., 2013 3 8, : : Frontiers in Physiology. 3 JAN, Article 479.

研究成果: Editorial

Review article

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.

Hucka, M., Finney, A., Bornstein, B. J., Keating, S. M., Shapiro, B. E., Matthews, J., Kovitz, B. L., Schilstra, M. J., Funahashi, A., Doyle, J. C. & Kitano, H., 2004 6, : : Systems biology. 1, 1, p. 41-53 13 p.

研究成果: Review article

156 引用 (Scopus)

The DBCLS BioHackathon: Standardization and interoperability for bioinformatics web services and workflows

Katayama, T., Arakawa, K., Nakao, M., Ono, K., Aoki-Kinoshita, K. F., Yamamoto, Y., Yamaguchi, A., Kawashima, S., Chun, H. W., Aerts, J., Aranda, B., Barboza, L. H., Bonnal, R. J. P., Bruskiewich, R., Bryne, J. C., Fernández, J. M., Funahashi, A., Gordon, P. M. K., Goto, N., Groscurth, A. および37人, Gutteridge, A., Holland, R., Kano, Y., Kawas, E. A., Kerhornou, A., Kibukawa, E., Kinjo, A. R., Kuhn, M., Lapp, H., Lehvaslaiho, H., Nakamura, H., Nakamura, Y., Nishizawa, T., Nobata, C., Noguchi, T., Oinn, T. M., Okamoto, S., Owen, S., Pafilis, E., Pocock, M., Prins, P., Ranzinger, R., Reisinger, F., Salwinski, L., Schreiber, M., Senger, M., Shigemoto, Y., Standley, D. M., Sugawara, H., Tashiro, T., Trelles, O., Vos, R. A., Wilkinson, M. D., York, W., Zmasek, C. M., Asai, K. & Takagi, T., 2010 8 21, : : Journal of Biomedical Semantics. 1, 8.

研究成果: Review article

21 引用 (Scopus)

The Systems Biology Graphical Notation

Novère, N. L., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K., Aladjem, M. I., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villéger, A., Boyd, S. E., Calzone, L., Courtot, M. および19人, Dogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K. & Kitano, H., 2009 8, : : Nature Biotechnology. 27, 8, p. 735-741 7 p.

研究成果: Review article

522 引用 (Scopus)

Using process diagrams for the graphical representation of biological networks

Kitano, H., Funahashi, A., Matsuoka, Y. & Oda, K., 2005 8 1, : : Nature Biotechnology. 23, 8, p. 961-966 6 p.

研究成果: Review article

321 引用 (Scopus)