• 2625 引用
  • 17 h指数
19962020

年単位の研究成果

Pureに変更を加えた場合、すぐここに表示されます。

研究成果

Article

Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11

Yamada, T. G., Hiki, Y., Hiroi, N. F., Shagimardanova, E., Gusev, O., Cornette, R., Kikawada, T. & Funahashi, A., 2020, : : PloS one. 15, 3, e0230218.

研究成果: Article

公開

Integration of cell designer and SABIO-RK

Funahashi, A., Jouraku, A., Matsuoka, Y. & Kitano, H., 2007 6 11, : : In Silico Biology. 7, SUPPL. 2, p. 81-90 10 p.

研究成果: Article

47 引用 (Scopus)

LibSBMLSim: A reference implementation of fully functional SBML simulator

Takizawa, H., Nakamura, K., Tabira, A., Chikahara, Y., Matsui, T., Hiroi, N. & Funahashi, A., 2013 6 1, : : Bioinformatics. 29, 11, p. 1474-1476 3 p.

研究成果: Article

10 引用 (Scopus)
7 引用 (Scopus)

Modeling and simulation using cellDesigner

Matsuoka, Y., Funahashi, A., Ghosh, S. & Kitano, H., 2014 1 1, : : Methods in Molecular Biology. 1164, p. 121-145 25 p.

研究成果: Article

35 引用 (Scopus)

Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network

Iwasaki, T., Takiguchi, R., Hiraiwa, T., Yamada, T. G., Yamazaki, K., Hiroi, N. & Funahashi, A., 2020 2 1, : : Processes. 8, 2, 166.

研究成果: Article

公開

Physiological environment induces quick response - slow exhaustion reactions

Hiroi, N., Lu, J., Iba, K., Tabira, A., Yamashita, S., Okada, Y., Flamm, C., Oka, K., Köhler, G. & Funahashi, A., 2011, : : Frontiers in Physiology. 2 SEP, Article 50.

研究成果: Article

9 引用 (Scopus)

Physiological intracellular crowdedness is defined by the perimeter-to-area ratio of sub-cellular compartments

Hiroi, N., Okuhara, T., Kubojima, T., Iba, K., Tabira, A., Yamashita, S., Okada, Y., Kobayashi, T. J. & Funahashi, A., 2012, : : Frontiers in Physiology. 3 JUL, Article 293.

研究成果: Article

1 引用 (Scopus)

Predicting the future direction of cell movement with convolutional neural networks

Nishimoto, S., Tokuoka, Y., Yamada, T. G., Hiroi, N. F. & Funahashi, A., 2019 9 1, : : PloS one. 14, 9, e0221245.

研究成果: Article

公開
2 引用 (Scopus)

ReCSiP: An FPGA-based general-purpose biochemical simulator

Osana, Y., Yoshimi, M., Iwaoka, Y., Kojima, T., Nishikawa, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H. & Amano, H., 2007 7 1, : : Electronics and Communications in Japan, Part II: Electronics (English translation of Denshi Tsushin Gakkai Ronbunshi). 90, 7, p. 1-10 10 p.

研究成果: Article

10 引用 (Scopus)
55 引用 (Scopus)

Simulation technology and its application in systems biology

Funahashi, A. & Hiroi, N., 2016, : : Folia Pharmacologica Japonica. 147, 2, p. 101-106 6 p.

研究成果: Article

Software support for SBGN maps: SBGN-ML and LibSBGN

Van Iersel, M. P., Villéger, A. C., Czauderna, T., Boyd, S. E., Bergmann, F. T., Luna, A., Demir, E., Sorokin, A., Dogrusoz, U., Matsuoka, Y., Funahashi, A., Aladjem, M. I., Mi, H., Moodie, S. L., Kitano, H., Le novère, N. & Schreiber, F., 2012 8, : : Bioinformatics. 28, 15, p. 2016-2021 6 p., bts270.

研究成果: Article

48 引用 (Scopus)

The principles of whole-cell modeling

Karr, J. R., Takahashi, K. & Funahashi, A., 2015 10 1, : : Current Opinion in Microbiology. 27, p. 18-24 7 p.

研究成果: Article

30 引用 (Scopus)

The systems biology simulation core algorithm

Keller, R., Dörr, A., Tabira, A., Funahashi, A., Ziller, M. J., Adams, R., Rodriguez, N., Novère, N. L., Hiroi, N., Planatscher, H., Zell, A. & Dräger, A., 2013 7 5, : : BMC Systems Biology. 7, 55.

研究成果: Article

21 引用 (Scopus)

Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery

Yamada, T. G., Suetsugu, Y., Deviatiiarov, R., Gusev, O., Cornette, R., Nesmelov, A., Hiroi, N., Kikawada, T. & Funahashi, A., 2018 12 1, : : Scientific reports. 8, 1, 17941.

研究成果: Article

2 引用 (Scopus)
公開