• 2584 引用
  • 17 h指数
19962020

年単位の研究成果

Pureに変更を加えた場合、すぐここに表示されます。

研究成果

フィルター
Article
2020

Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11

Yamada, T. G., Hiki, Y., Hiroi, N., Shagimardanova, E., Gusev, O., Cornette, R., Kikawada, T. & Funahashi, A., 2020 1 1, : : PloS one. 15, 3, e0230218.

研究成果: Article

公開

Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network

Iwasaki, T., Takiguchi, R., Hiraiwa, T., Yamada, T. G., Yamazaki, K., Hiroi, N. & Funahashi, A., 2020 2 1, : : Processes. 8, 2, 166.

研究成果: Article

公開
2019
公開

Predicting the future direction of cell movement with convolutional neural networks

Nishimoto, S., Tokuoka, Y., Yamada, T. G., Hiroi, N. F. & Funahashi, A., 2019, : : PloS one. 14, 9, e0221245.

研究成果: Article

公開
1 引用 (Scopus)
公開
2018

Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery

Yamada, T., Suetsugu, Y., Deviatiiarov, R., Gusev, O., Cornette, R., Nesmelov, A., Hiroi, N., Kikawada, T. & Funahashi, A., 2018 12 1, : : Scientific Reports. 8, 1, 17941.

研究成果: Article

2 引用 (Scopus)
2016

Detection of Temperature Difference in Neuronal Cells

Tanimoto, R., Hiraiwa, T., Nakai, Y., Shindo, Y., Oka, K., Hiroi, N. & Funahashi, A., 2016 3 1, : : Scientific Reports. 6, 22071.

研究成果: Article

47 引用 (Scopus)

Simulation technology and its application in systems biology

Funahashi, A. & Hiroi, N., 2016, : : Folia Pharmacologica Japonica. 147, 2, p. 101-106 6 p.

研究成果: Article

2015

Acceleration of discrete stochastic biochemical simulation using GPGPU

Sumiyoshi, K., Hirata, K., Hiroi, N. & Funahashi, A., 2015 1 1, : : Frontiers in Physiology. 6, FEB, 42.

研究成果: Article

7 引用 (Scopus)

A proteomic study of mitotic phase-Specific interactors of EB1 reveals a role for SXIP-Mediated protein interactions in anaphase onset

Tamura, N., Simon, J. E., Nayak, A., Shenoy, R., Hiroi, N., Boilot, V., Funahashi, A. & Draviam, V. M., 2015 2 15, : : Biology Open. 4, 2, p. 155-169 15 p.

研究成果: Article

17 引用 (Scopus)

High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes

Nakai, Y., Ozeki, M., Hiraiwa, T., Tanimoto, R., Funahashi, A., Hiroi, N., Taniguchi, A., Nonaka, S., Boilot, V., Shrestha, R., Clark, J., Tamura, N., Draviam, V. M. & Oku, H., 2015 1 1, : : Review of Scientific Instruments. 86, 1, 013707.

研究成果: Article

32 引用 (Scopus)

The principles of whole-cell modeling

Karr, J. R., Takahashi, K. & Funahashi, A., 2015 10 1, : : Current Opinion in Microbiology. 27, p. 18-24 7 p.

研究成果: Article

28 引用 (Scopus)
2014
1 引用 (Scopus)

Modeling and simulation using cellDesigner

Matsuoka, Y., Funahashi, A., Ghosh, S. & Kitano, H., 2014 1 1, : : Methods in Molecular Biology. 1164, p. 121-145 25 p.

研究成果: Article

33 引用 (Scopus)
2013

Automated tracking of mitotic spindle pole positions shows that LGN is required for spindle rotation but not orientation maintenance

Corrigan, A. M., Shrestha, R. L., Zulkipli, I., Hiroi, N., Liu, Y., Tamura, N., Yang, B., Patel, J., Funahashi, A., Donald, A. & Draviam, V. M., 2013 8 15, : : Cell Cycle. 12, 16, p. 2643-2655 13 p.

研究成果: Article

16 引用 (Scopus)

LibSBMLSim: A reference implementation of fully functional SBML simulator

Takizawa, H., Nakamura, K., Tabira, A., Chikahara, Y., Matsui, T., Hiroi, N. & Funahashi, A., 2013 6 1, : : Bioinformatics. 29, 11, p. 1474-1476 3 p.

研究成果: Article

10 引用 (Scopus)

The systems biology simulation core algorithm

Keller, R., Dörr, A., Tabira, A., Funahashi, A., Ziller, M. J., Adams, R., Rodriguez, N., Novère, N. L., Hiroi, N., Planatscher, H., Zell, A. & Dräger, A., 2013 7 5, : : BMC Systems Biology. 7, 55.

研究成果: Article

20 引用 (Scopus)
2012

From microscopy data to in silico environments for in vivo-oriented simulations

Hiroi, N., Klann, M., Iba, K., Heras Ciechomski, P. D., Yamashita, S., Tabira, A., Okuhara, T., Kubojima, T., Okada, Y., Oka, K., Mange, R., Unger, M., Funahashi, A. & Koeppl, H., 2012, : : Eurasip Journal on Bioinformatics and Systems Biology. 2012, 1, 7.

研究成果: Article

5 引用 (Scopus)
7 引用 (Scopus)

Physiological intracellular crowdedness is defined by the perimeter-to-area ratio of sub-cellular compartments

Hiroi, N., Okuhara, T., Kubojima, T., Iba, K., Tabira, A., Yamashita, S., Okada, Y., Kobayashi, T. J. & Funahashi, A., 2012 9 25, : : Frontiers in Physiology. 3 JUL, Article 293.

研究成果: Article

1 引用 (Scopus)

Software support for SBGN maps: SBGN-ML and LibSBGN

Van Iersel, M. P., Villéger, A. C., Czauderna, T., Boyd, S. E., Bergmann, F. T., Luna, A., Demir, E., Sorokin, A., Dogrusoz, U., Matsuoka, Y., Funahashi, A., Aladjem, M. I., Mi, H., Moodie, S. L., Kitano, H., Le novère, N. & Schreiber, F., 2012 8, : : Bioinformatics. 28, 15, p. 2016-2021 6 p., bts270.

研究成果: Article

46 引用 (Scopus)
2011

BioPAX support in CellDesigner

Mi, H., Muruganujan, A., Demir, E., Matsuoka, Y., Funahashi, A., Kitano, H. & Thomas, P. D., 2011 12 1, : : Bioinformatics. 27, 24, p. 3437-3438 2 p., btr586.

研究成果: Article

13 引用 (Scopus)

Physiological environment induces quick response - slow exhaustion reactions

Hiroi, N., Lu, J., Iba, K., Tabira, A., Yamashita, S., Okada, Y., Flamm, C., Oka, K., Köhler, G. & Funahashi, A., 2011, : : Frontiers in Physiology. 2 SEP, Article 50.

研究成果: Article

8 引用 (Scopus)
2010

Automatic pipeline construction focused on similarity of rate law functions for an FPGA-based biochemical simulator

Yamada, H., Ogawa, Y., Ooya, T., Ishimori, T., Osana, Y., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N., Amano, H., Shibata, Y. & Oguri, K., 2010 12 1, : : IPSJ Transactions on System LSI Design Methodology. 3, p. 244-256 13 p.

研究成果: Article

2 引用 (Scopus)
2008

CellDesigner 3.5: A versatile modeling tool for biochemical networks

Funahashi, A., Matsuoka, Y., Jouraku, A., Morohashi, M., Kikuchi, N. & Kitano, H., 2008 8, : : Proceedings of the IEEE. 96, 8, p. 1254-1265 12 p., 4567412.

研究成果: Article

295 引用 (Scopus)
2007

Deduction of intracellular sub-systems from a topological description of the network

Nordling, T. E. M., Hiroi, N., Funahashi, A. & Kitano, H., 2007 1 1, : : Molecular BioSystems. 3, 8, p. 523-529 7 p.

研究成果: Article

7 引用 (Scopus)

Integration of cell designer and SABIO-RK

Funahashi, A., Jouraku, A., Matsuoka, Y. & Kitano, H., 2007 6 11, : : In Silico Biology. 7, SUPPL. 2, p. 81-90 10 p.

研究成果: Article

47 引用 (Scopus)

ReCSiP: An FPGA-based general-purpose biochemical simulator

Osana, Y., Yoshimi, M., Iwaoka, Y., Kojima, T., Nishikawa, Y., Funahashi, A., Hiroi, N., Shibata, Y., Iwanaga, N., Kitano, H. & Amano, H., 2007 7 1, : : Electronics and Communications in Japan, Part II: Electronics (English translation of Denshi Tsushin Gakkai Ronbunshi). 90, 7, p. 1-10 10 p.

研究成果: Article

10 引用 (Scopus)
2006
16 引用 (Scopus)
2005

A comprehensive pathway map of epidermal growth factor receptor signaling.

Oda, K., Matsuoka, Y., Funahashi, A. & Kitano, H., 2005, : : Molecular systems biology. 1, p. 2005.0010

研究成果: Article

686 引用 (Scopus)
2001
55 引用 (Scopus)
1996