荒川 和晴

研究成果

年別の研究成果 2000 2019 2020 2021 2022

• 107 Article
• 7 Review article
• 4 Comment/debate
• 2 Chapter
• 2 その他
  • 2 Letter

年別の研究成果

年別の研究成果

検索結果

• Tardigrades in space

  Arakawa, K. & Blaxter, M., 2018 2月 1, In: Biologist. 65, 1, p. 14-17 4 p.

  研究成果: Comment/debate › 査読

• The 2nd DBCLS BioHackathon: Interoperable bioinformatics Web services for integrated applications

  Katayama, T., Wilkinson, M. D., Vos, R., Kawashima, T., Kawashima, S., Nakao, M., Yamamoto, Y., Chun, H. W., Yamaguchi, A., Kawano, S., Aerts, J., Aoki-Kinoshita, K. F., Arakawa, K., Aranda, B., Bonnal, R. J. P., Fernández, J. M., Fujisawa, T., Gordon, P. M. K., Goto, N., Haider, S., & 37 othersHarris, T., Hatakeyama, T., Ho, I., Itoh, M., Kasprzyk, A., Kido, N., Kim, Y. J., Kinjo, A. R., Konishi, F., Kovarskaya, Y., von Kuster, G., Labarga, A., Limviphuvadh, V., McCarthy, L., Nakamura, Y., Nam, Y., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Oinn, T., Okamoto, S., Okuda, S., Ono, K., Oshita, K., Park, K. J., Putnam, N., Senger, M., Severin, J., Shigemoto, Y., Sugawara, H., Taylor, J., Trelles, O., Yamasaki, C., Yamashita, R., Satoh, N. & Takagi, T., 2011 8月 2, In: Journal of Biomedical Semantics. 2, 1, 4.

  研究成果: Article › 査読

  Open Access

  • Workflow 100%
  • Bioinformatics 98%
  • Computational Biology 85%
  • Web services 82%
  • Genomics 47%
  10 被引用数 (Scopus)

• The 3rd DBCLS BioHackathon: Improving life science data integration with Semantic Web technologies

  Katayama, T., Wilkinson, M. D., Micklem, G., Kawashima, S., Yamaguchi, A., Nakao, M., Yamamoto, Y., Okamoto, S., Oouchida, K., Chun, H. W., Aerts, J., Afzal, H., Antezana, E., Arakawa, K., Aranda, B., Belleau, F., Bolleman, J., Bonnal, R. J. P., Chapman, B., Cock, P. J. A., & 46 othersEriksson, T., Gordon, P. M. K., Goto, N., Hayashi, K., Horn, H., Ishiwata, R., Kaminuma, E., Kasprzyk, A., Kawaji, H., Kido, N., Kim, Y. J., Kinjo, A. R., Konishi, F., Kwon, K. H., Labarga, A., Lamprecht, A. L., Lin, Y., Lindenbaum, P., McCarthy, L., Morita, H., Murakami, K., Nagao, K., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Ono, K., Oshita, K., Park, K. J., Prins, P., Saito, T. L., Samwald, M., Satagopam, V. P., Shigemoto, Y., Smith, R., Splendiani, A., Sugawara, H., Taylor, J., Vos, R. A., Withers, D., Yamasaki, C., Zmasek, C. M., Kawamoto, S., Okubo, K., Asai, K. & Takagi, T., 2013 2月 11, In: Journal of Biomedical Semantics. 4, 1, 6.

  研究成果: Review article › 査読

  Open Access

  • Semantic Web 100%
  • Biological Science Disciplines 99%
  • Data integration 90%
  • Technology 51%
  • Databases 47%
  18 被引用数 (Scopus)

• The bagworm genome reveals a unique fibroin gene that provides high tensile strength

  Kono, N., Nakamura, H., Ohtoshi, R., Tomita, M., Numata, K. & Arakawa, K., 2019 12月 1, In: Communications biology. 2, 1, 148.

  研究成果: Article › 査読

  Open Access

  • bagworms 100%
  • Fibroins 85%
  • Silk 77%
  • fibroins 76%
  • Tensile Strength 69%
  18 被引用数 (Scopus)

• The balance of crystalline and amorphous regions in the fibroin structure underpins the tensile strength of bagworm silk

  Kono, N., Nakamura, H., Tateishi, A., Numata, K. & Arakawa, K., 2021 12月, In: Zoological Letters. 7, 1, 11.

  研究成果: Article › 査読

  Open Access

  • bagworms 100%
  • fibroins 76%
  • silk 61%
  • tensile strength 51%
  • Psychidae 19%
  4 被引用数 (Scopus)

• The complete mitochondrial genome of Echiniscus testudo (Heterotardigrada: Echiniscidae)

  Arakawa, K., 2018 7月 3, In: Mitochondrial DNA Part B: Resources. 3, 2, p. 810-811 2 p.

  研究成果: Article › 査読

  Open Access

  • Mitochondrial Genome 100%
  • Genome 53%
  • Tardigrada 52%
  • AT Rich Sequence 40%
  • Gene Order 34%
  3 被引用数 (Scopus)

• The complete mitochondrial genome of Eumeta variegata (Lepidoptera: Psychidae)

  Arakawa, K., Kono, N., Ohtoshi, R., Nakamura, H. & Tomita, M., 2018 7月 3, In: Mitochondrial DNA Part B: Resources. 3, 2, p. 812-813 2 p.

  研究成果: Article › 査読

  Open Access

  • Lepidoptera 100%
  • Mitochondrial Genome 75%
  • Nanopores 46%
  • AT Rich Sequence 45%
  • Moths 41%
  6 被引用数 (Scopus)

• The complete mitochondrial genome of Trichonephila clavipes (Araneae: Araneidae)

  Kono, N., Nakamura, H. & Arakawa, K., 2021, In: Mitochondrial DNA Part B: Resources. 6, 10, p. 2986-2988 3 p.

  研究成果: Article › 査読

  Open Access

  • Mitochondrial Genome 100%
  • Nanopores 61%
  • Spiders 54%
  • Genome 53%
  • Technology 51%

• The DBCLS BioHackathon: Standardization and interoperability for bioinformatics web services and workflows

  Katayama, T., Arakawa, K., Nakao, M., Ono, K., Aoki-Kinoshita, K. F., Yamamoto, Y., Yamaguchi, A., Kawashima, S., Chun, H. W., Aerts, J., Aranda, B., Barboza, L. H., Bonnal, R. J. P., Bruskiewich, R., Bryne, J. C., Fernández, J. M., Funahashi, A., Gordon, P. M. K., Goto, N., Groscurth, A., & 37 othersGutteridge, A., Holland, R., Kano, Y., Kawas, E. A., Kerhornou, A., Kibukawa, E., Kinjo, A. R., Kuhn, M., Lapp, H., Lehvaslaiho, H., Nakamura, H., Nakamura, Y., Nishizawa, T., Nobata, C., Noguchi, T., Oinn, T. M., Okamoto, S., Owen, S., Pafilis, E., Pocock, M., Prins, P., Ranzinger, R., Reisinger, F., Salwinski, L., Schreiber, M., Senger, M., Shigemoto, Y., Standley, D. M., Sugawara, H., Tashiro, T., Trelles, O., Vos, R. A., Wilkinson, M. D., York, W., Zmasek, C. M., Asai, K. & Takagi, T., 2010 8月 21, In: Journal of Biomedical Semantics. 1, 8.

  研究成果: Review article › 査読

  • Biological Science Disciplines 100%
  • Workflow 88%
  • Bioinformatics 87%
  • Standardization 76%
  • Interoperability 75%
  25 被引用数 (Scopus)

• The evidence of temporary social parasitism by Polyrhachis lamellidens (Hymenoptera, Formicidae) in a Camponotus obscuripes colony (Hymenoptera, Formicidae)

  Iwai, H., Kurihara, Y., Kono, N., Tomita, M. & Arakawa, K., 2021 11月, In: Insectes Sociaux. 68, 4, p. 375-382 8 p.

  研究成果: Article › 査読

  Open Access

  • social parasitism 100%
  • Polyrhachis 75%
  • Camponotus 63%
  • rearing 43%
  • Formicidae 40%
  2 被引用数 (Scopus)

• The GC skew index: A measure of genomic compositional asymmetry and the degree of replicational selection

  Arakawa, K. & Tomita, M., 2007 9月 6, In: Evolutionary Bioinformatics. 3, p. 159-168 10 p.

  研究成果: Article › 査読

  Open Access

  • Bacterial Chromosomes 100%
  • Bacterial Genomes 89%
  • Replication Origin 83%
  • Fourier Analysis 78%
  • graphs 72%
  31 被引用数 (Scopus)

• The genome-based E-cell modeling (GEM) system

  Arakawa, K., Yamada, Y., Shinoda, K., Nakayama, Y. & Tomita, M., 2005 1月 1, Metabolomics: The Frontier of Systems Biology. Springer-Verlag Tokyo, p. 211-220 10 p.

  研究成果: Chapter

  • Genome 100%
  • Systems Biology 88%
  • Nucleic Acid Databases 86%
  • Biotechnology 85%
  • Metabolome 83%

• The orientation bias of Chi sequences is a general tendency of G-rich oligomers

  Uno, R., Nakayama, Y., Arakawa, K. & Tomita, M., 2000 12月 23, In: Gene. 259, 1-2, p. 207-215 9 p.

  研究成果: Article › 査読

  • Base Composition 100%
  • Genome 58%
  • Recombinational DNA Repair 56%
  • Replication Origin 54%
  • Haemophilus influenzae 49%
  19 被引用数 (Scopus)

• The unique antimicrobial recognition and signaling pathways in tardigrades with a comparison across ecdysozoa

  Mapalo, M. A., Arakawa, K., Baker, C. M., Persson, D. K., Mirano-Bascos, D. & Giribet, G., 2020 3月 1, In: G3: Genes, Genomes, Genetics. 10, 3, p. 1137-1148 12 p.

  研究成果: Article › 査読

  Open Access

  • Tardigrada 100%
  • Caenorhabditis elegans 55%
  • Drosophila melanogaster 55%
  • NF-kappa B 53%
  • Arthropods 32%
  7 被引用数 (Scopus)

• Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades

  Yoshida, Y., Satoh, T., Ota, C., Tanaka, S., Horikawa, D. D., Tomita, M., Kato, K. & Arakawa, K., 2022 12月, In: BMC Genomics. 23, 1, 405.

  研究成果: Article › 査読

  Open Access

  • Tardigrada 100%
  • manganese peroxidase 94%
  • Ultraviolet Rays 78%
  • Extreme Environments 39%
  • Desiccation 37%
  2 被引用数 (Scopus)

• Transcriptomic data during development of a two-spotted cricket Gryllus bimaculatus

  Kono, N., Nakamura, H., Ohtoshi, R. & Arakawa, K., 2021 10月, In: Data in Brief. 38, 107388.

  研究成果: Article › 査読

  Open Access

  • Gryllus bimaculatus 100%
  • transcriptomics 61%
  • nutrients 27%
  • reptiles 23%
  • molting 22%
  2 被引用数 (Scopus)

• Two Novel Heat-Soluble Protein Families Abundantly Expressed in an Anhydrobiotic Tardigrade

  Yamaguchi, A., Tanaka, S., Yamaguchi, S., Kuwahara, H., Takamura, C., Imajoh-Ohmi, S., Horikawa, D. D., Toyoda, A., Katayama, T., Arakawa, K., Fujiyama, A., Kubo, T. & Kunieda, T., 2012 8月 28, In: PloS one. 7, 8, e44209.

  研究成果: Article › 査読

  Open Access

  • Tardigrada 100%
  • Hot Temperature 56%
  • heat 40%
  • Protein 29%
  • Proteins 26%
  76 被引用数 (Scopus)

• Ultralow input genome sequencing library preparation from a single tardigrade specimen

  Yoshida, Y., Konno, S., Nishino, R., Murai, Y., Tomita, M. & Arakawa, K., 2018 7月 15, In: Journal of Visualized Experiments. 2018, 137, e57615.

  研究成果: Article › 査読

  • Genomic Library 100%
  • Tardigrada 65%
  • DNA Sequencing 61%
  • Animals 47%
  • Genomics 34%
  4 被引用数 (Scopus)

• Undesigned selection for replication termination of bacterial chromosomes

  Kono, N., Arakawa, K., Sato, M., Yoshikawa, H., Tomita, M. & Itaya, M., 2014 8月 12, In: Journal of Molecular Biology. 426, 16, p. 2918-2927 10 p.

  研究成果: Article › 査読

  • Bacterial Chromosomes 100%
  • Replicon 84%
  • Carrier Proteins 56%
  • Artificial Chromosomes 56%
  • Chromosome Structures 47%
  8 被引用数 (Scopus)

• Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli

  Arakawa, K., Uno, R., Nakayama, Y. & Tomita, M., 2007 5月 1, In: Gene. 392, 1-2, p. 239-246 8 p.

  研究成果: Article › 査読

  • Nucleotides 100%
  • Escherichia coli 87%
  • Genome 63%
  • Open Reading Frames 59%
  • Direction compound 44%
  14 被引用数 (Scopus)

• Validation of bacterial replication termination models using simulation of genomic mutations

  Kono, N., Arakawa, K. & Tomita, M., 2012 4月 3, In: PloS one. 7, 4, e34526.

  研究成果: Article › 査読

  • Asymmetry 100%
  • simulation models 97%
  • Mutation 79%
  • Chromosomes 74%
  • Bacterial Chromosomes 71%
  12 被引用数 (Scopus)

• Xanthurenic acid is the main pigment of trichonephila clavata gold dragline silk

  Fujiwara, M., Kono, N., Hirayama, A., Malay, A. D., Nakamura, H., Ohtoshi, R., Numata, K., Tomita, M. & Arakawa, K., 2021 4月, In: Biomolecules. 11, 4, 563.

  研究成果: Article › 査読

  Open Access

  • xanthurenic acid 100%
  • Xanthurenic Acid 99%
  • Spiders 80%
  • Silk 76%
  • Gold 60%
  5 被引用数 (Scopus)