• 1435 引用
  • 16 h指数
20042020

年単位の研究成果

Pureに変更を加えた場合、すぐここに表示されます。

研究成果

  • 1435 引用
  • 16 h指数
  • 45 Article
  • 5 Conference contribution
  • 2 Editorial
フィルター
Article
2020

An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data

Jayakumar, V., Ishii, H., Seki, M., Kumita, W., Inoue, T., Hase, S., Sato, K., Okano, H., Sasaki, E. & Sakakibara, Y., 2020 4 2, : : BMC Genomics. 21, 243.

研究成果: Article

公開
2019

Efficient generation of Knock-in/Knock-out marmoset embryo via CRISPR/Cas9 gene editing

Kumita, W., Sato, K., Suzuki, Y., Kurotaki, Y., Harada, T., Zhou, Y., Kishi, N., Sato, K., Aiba, A., Sakakibara, Y., Feng, G., Okano, H. & Sasaki, E., 2019 12 1, : : Scientific reports. 9, 1, 12719.

研究成果: Article

公開
2 引用 (Scopus)
2018
2 引用 (Scopus)
11 引用 (Scopus)
2017

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data

Kato, Y., Mori, T., Sato, K., Maegawa, S., Hosokawa, H. & Akutsu, T., 2017 1 15, : : Bioinformatics. 33, 2, p. 202-209 8 p.

研究成果: Article

2 引用 (Scopus)

DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions

Aoto, Y., Hachiya, T., Okumura, K., Hase, S., Sato, K., Wakabayashi, Y. & Sakakibara, Y., 2017 11, : : PloS one. 12, 11, e0188285.

研究成果: Article

4 引用 (Scopus)
2016
1 引用 (Scopus)

Rtools: a web server for various secondary structural analyses on single RNA sequences

Hamada, M., Ono, Y., Kiryu, H., Sato, K., Kato, Y., Fukunaga, T., Mori, R. & Asai, K., 2016 7 8, : : Nucleic acids research. 44, W1, p. W302-W307

研究成果: Article

10 引用 (Scopus)

SHARAKU: An algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing

Tsuchiya, M., Amano, K., Abe, M., Seki, M., Hase, S., Sato, K. & Sakakibara, Y., 2016 6 15, : : Bioinformatics. 32, 12, p. i369-i377

研究成果: Article

1 引用 (Scopus)
2015
7 引用 (Scopus)
42 引用 (Scopus)

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis

Sato, K., Kuroki, Y., Kumita, W., Fujiyama, A., Toyoda, A., Kawai, J., Iriki, A., Sasaki, E., Okano, H. & Sakakibara, Y., 2015 11 20, : : Scientific reports. 5, 16894.

研究成果: Article

22 引用 (Scopus)

Whole-genome sequencing and comparative genome analysis of bacillus subtilis strains isolated from non-salted fermented soybean foods

Kamada, M., Hase, S., Fujii, K., Miyake, M., Sato, K., Kimura, K. & Sakakibara, Y., 2015 10 27, : : PloS one. 10, 10, e0141369.

研究成果: Article

15 引用 (Scopus)
2014

Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads

Kamada, M., Hase, S., Sato, K., Toyoda, A., Fujiyama, A. & Sakakibara, Y., 2014 10 16, : : PloS one. 9, 10, e109999.

研究成果: Article

26 引用 (Scopus)
2013
8 引用 (Scopus)
2012

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds.

Nakamura, M., Hachiya, T., Saito, Y., Sato, K. & Sakakibara, Y., 2012, : : Unknown Journal. 13 Suppl 17, p. S8

研究成果: Article

公開
17 引用 (Scopus)

COPICAT: A software system for predicting interactions between proteins and chemical compounds

Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T. & Sato, K., 2012 3 1, : : Bioinformatics. 28, 5, p. 745-746 2 p., bts031.

研究成果: Article

12 引用 (Scopus)

DAFS: Simultaneous aligning and folding of RNA sequences via dual decomposition

Sato, K., Kato, Y., Akutsu, T., Asai, K. & Sakakibara, Y., 2012 12 1, : : Bioinformatics. 28, 24, p. 3218-3224 7 p.

研究成果: Article

18 引用 (Scopus)

Rtips: Fast and accurate tools for RNA 2D structure prediction using integer programming

Kato, Y., Sato, K., Asai, K. & Akutsu, T., 2012 7, : : Nucleic acids research. 40, W1, p. W29-W34

研究成果: Article

7 引用 (Scopus)
2011

Adaptive seeds tame genomic sequence comparison

Kiełbasa, S. M., Wan, R., Sato, K., Horton, P. & Frith, M. C., 2011 3, : : Genome Research. 21, 3, p. 487-493 7 p.

研究成果: Article

473 引用 (Scopus)

CentroidHomfold-LAST: Accurate prediction of RNA secondary structure using automatically collected homologous sequences

Hamada, M., Yamada, K., Sato, K., Frith, M. C. & Asai, K., 2011 7 1, : : Nucleic acids research. 39, SUPPL. 2, p. W100-W106

研究成果: Article

15 引用 (Scopus)
9 引用 (Scopus)

Improving the accuracy of predicting secondary structure for aligned RNA sequences

Hamada, M., Sato, K. & Asai, K., 2011 1, : : Nucleic acids research. 39, 2, p. 393-402 10 p.

研究成果: Article

34 引用 (Scopus)

IPknot: Fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

Sato, K., Kato, Y., Hamada, M., Akutsu, T. & Asai, K., 2011 7, : : Bioinformatics. 27, 13, p. i85-i93 btr215.

研究成果: Article

104 引用 (Scopus)

Using binding profiles to predict binding sites of target RNAs

Poolsap, U., Kato, Y., Sato, K. & Akutsu, T., 2011 12 1, : : Journal of Bioinformatics and Computational Biology. 9, 6, p. 697-713 17 p.

研究成果: Article

6 引用 (Scopus)
2010

A non-parametric bayesian approach for predicting rna secondary structures

Sato, K., Hamada, M., Mituyama, T., Asai, K. & Sakakibara, Y., 2010 8 1, : : Journal of Bioinformatics and Computational Biology. 8, 4, p. 727-742 16 p.

研究成果: Article

7 引用 (Scopus)

Prediction of RNA secondary structure by maximizing pseudo-expected accuracy

Hamada, M., Sato, K. & Asai, K., 2010 11 30, : : BMC bioinformatics. 11, 586.

研究成果: Article

18 引用 (Scopus)

RactIP: Fast and accurate prediction of RNA-RNA interaction using integer programming

Kato, Y., Sato, K., Hamada, M., Watanabe, Y., Asai, K. & Akutsu, T., 2010 9 4, : : Bioinformatics. 26, 18, p. i460-i466 btq372.

研究成果: Article

47 引用 (Scopus)
1 引用 (Scopus)
2009

CentroidAlign: Fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score

Hamada, M., Sato, K., Kiryu, H., Mituyama, T. & Asai, K., 2009 10 6, : : Bioinformatics. 25, 24, p. 3236-3243 8 p., btp580.

研究成果: Article

35 引用 (Scopus)

CentroidFold: A web server for RNA secondary structure prediction

Sato, K., Hamada, M., Asai, K. & Mituyama, T., 2009, : : Nucleic acids research. 37, SUPPL. 2, p. W277-W280

研究成果: Article

166 引用 (Scopus)
6 引用 (Scopus)

Prediction of RNA secondary structure using generalized centroid estimators

Hamada, M., Kiryu, H., Sato, K., Mituyama, T. & Asai, K., 2009 2 1, : : Bioinformatics. 25, 4, p. 465-473 9 p.

研究成果: Article

140 引用 (Scopus)

Predictions of RNA secondary structure by combining homologous sequence information

Hamada, M., Sato, K., Kiryu, H., Mituyama, T. & Asai, K., 2009 6 9, : : Bioinformatics. 25, 12, p. i330-i338

研究成果: Article

31 引用 (Scopus)
2008

Directed acyclic graph kernels for structural RNA analysis

Sato, K., Mituyama, T., Asai, K. & Sakakibara, Y., 2008 7 22, : : BMC bioinformatics. 9, 318.

研究成果: Article

5 引用 (Scopus)

PSSMTS: Position specific scoring matrices on tree structures

Sato, K., Morita, K. & Sakakibara, Y., 2008 1 1, : : Journal of Mathematical Biology. 56, 1-2, p. 201-214 14 p.

研究成果: Article

4 引用 (Scopus)

Software.ncrna.org: web servers for analyses of RNA sequences.

Asai, K., Kiryu, H., Hamada, M., Tabei, Y., Sato, K., Matsui, H., Sakakibara, Y., Terai, G. & Mituyama, T., 2008 7 1, : : Nucleic acids research. 36, Web Server issue, p. W75-78

研究成果: Article

5 引用 (Scopus)
2007

Stem kernels for RNA sequence analyses

Sakakibara, Y., Popendorf, K., Ogawa, N., Asai, K. & Sato, K., 2007 10 1, : : Journal of Bioinformatics and Computational Biology. 5, 5, p. 1103-1122 20 p.

研究成果: Article

11 引用 (Scopus)
2005
47 引用 (Scopus)

RNA secondary structural alignment with conditional random fields

Sato, K. & Sakakibara, Y., 2005 9 1, : : Bioinformatics. 21, SUPPL. 2, p. ii237-ii242

研究成果: Article

53 引用 (Scopus)