A combining technique of rate law functions for a cost-effective reconfigurable biological simulator

Hideki Yamada, Naoki Iwanaga, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Kitano Hiroaki Kitano, Oguri Kiyoshi Oguri

研究成果: Conference contribution

2 被引用数 (Scopus)

抄録

In order to simulate large scale biological models with a reconfigurable FPGA-based biochemical simulator system, reduction of required resources are essential. This paper proposes a method which combines common terms in rate law functions appeared in biochemical models and generates a shared hardware module used for numerical integration. In this approach, two functions are combined in a tree structure level, followed by pipeline scheduling and arithmetic module binding. The evaluation result reveals that this approach reduces hardware resources by 31.4 % on average at the cost of 14.4 % throughput degradation.

本文言語English
ホスト出版物のタイトルProceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL
ページ808-811
ページ数4
DOI
出版ステータスPublished - 2007
イベント2007 International Conference on Field Programmable Logic and Applications, FPL - Amsterdam, Netherlands
継続期間: 2007 8 272007 8 29

出版物シリーズ

名前Proceedings - 2007 International Conference on Field Programmable Logic and Applications, FPL

Other

Other2007 International Conference on Field Programmable Logic and Applications, FPL
CountryNetherlands
CityAmsterdam
Period07/8/2707/8/29

ASJC Scopus subject areas

  • Computer Science Applications
  • Electrical and Electronic Engineering

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