A framework for implementing a network-based stochastic biochemical simulator on an FPGA

Masato Yoshimi, Yuri Nishikawa, Toshlinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Hideki Yamada, Hiroaki Kitano, Hideharu Amano

研究成果: Conference contribution

1 被引用数 (Scopus)

抄録

This paper studies several designs of network-based FPGA implementation of a stochastic simulation algorithm called the Next Reaction Method, known for its large number of calculattion involved. The procedure is divided into several subdivisions which will be implemented as independent modules, and they are connected with configurable interconnection networks so as to provide high throughput. By performing a multi-threading simulation, 3.6 times speedup was obtained compared with an execution on general purpose processors.

本文言語English
ホスト出版物のタイトルICFPT 2007 - International Conference on Field Programmable Technology
ページ193-200
ページ数8
DOI
出版ステータスPublished - 2007 12 1
イベントInternational Conference on Field Programmable Technology, ICFPT 2007 - Kitakyushu, Japan
継続期間: 2007 12 122007 12 14

出版物シリーズ

名前ICFPT 2007 - International Conference on Field Programmable Technology

Other

OtherInternational Conference on Field Programmable Technology, ICFPT 2007
CountryJapan
CityKitakyushu
Period07/12/1207/12/14

ASJC Scopus subject areas

  • Hardware and Architecture
  • Electrical and Electronic Engineering

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