Celldesigner: A modeling tool for biochemical networks

Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi

研究成果: Conference contribution

20 被引用数 (Scopus)

抄録

Understanding of logic and dynamics of gene-regulatory and biochemical networks is a major challenge of systems biology. To facilitate this research topic, we have developed CellDesigner, a modeling tool of gene-regulatory and biochemical networks. CellDesigner supports users to easily create such networks using solidly defined and comprehensive graphical representation (SBGN: Systems Biology Graphical Notation). CellDesigner is SBML compliant, and is SBW-enabled software so that it can import/export SBML described documents and can integrate with other SBW-enabled simulation/analysis software packages. CellDesigner also supports simulation and parameter search, which is supported by integration with SBML ODE Solver, enabling us to simulate through our sophisticated graphical user interface. We could also browse and modify existing SBML models with references to existing databases. CellDesigner is implemented in Java, thus it runs on various platforms such as Windows, Linux, and MacOS X. CellDesigner is freely available via the Web.

本文言語English
ホスト出版物のタイトルProceedings of the 2006 Winter Simulation Conference, WSC
ページ1707-1712
ページ数6
DOI
出版ステータスPublished - 2006 12 1
外部発表はい
イベント2006 Winter Simulation Conference, WSC - Monterey, CA, United States
継続期間: 2006 12 32006 12 6

出版物シリーズ

名前Proceedings - Winter Simulation Conference
ISSN(印刷版)0891-7736

Other

Other2006 Winter Simulation Conference, WSC
CountryUnited States
CityMonterey, CA
Period06/12/306/12/6

ASJC Scopus subject areas

  • Software
  • Modelling and Simulation
  • Computer Science Applications

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