Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

Noriyuki Kitagawa, Takanori Washio, Shunichi Kosugi, Tomoya Yamashita, Kenji Higashi, Hiroshi Yanagawa, Kenichi Higo, Koji Satoh, Yasuhiro Ohtomo, Tomomi Sunako, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Masaru Tomita

研究成果: Article

23 引用 (Scopus)

抄録

Motivation: Transcription start site selection and alternative splicing greatly contribute to diversifying gene expression. Recent studies have revealed the existence of alternative first exons, but most have involved mammalian genes, and as yet the regulation of usage of alternative first exons has not been clarified, especially in plants. Results: We systematically identified putative alternative first exon transcripts in rice, verified the candidates using RT-PCR, and searched for the promoter elements that might regulate the alternative first exons. As a result, we detected a number of unreported alternative first exons, some of which are regulated in a tissue-specific manner.

元の言語English
ページ(範囲)1758-1763
ページ数6
ジャーナルBioinformatics
21
発行部数9
DOI
出版物ステータスPublished - 2005 5 1

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Rice (Oryza sativa)
Site selection
Computational Analysis
Transcription
Gene expression
Exons
Genes
Tissue
Alternatives
Alternative Splicing
Transcription Initiation Site
Promoter
Gene Expression
Oryza
Gene
Polymerase Chain Reaction

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computer Science Applications
  • Computational Theory and Mathematics

これを引用

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). / Kitagawa, Noriyuki; Washio, Takanori; Kosugi, Shunichi; Yamashita, Tomoya; Higashi, Kenji; Yanagawa, Hiroshi; Higo, Kenichi; Satoh, Koji; Ohtomo, Yasuhiro; Sunako, Tomomi; Murakami, Kazuo; Matsubara, Kenichi; Kawai, Jun; Carninci, Piero; Hayashizaki, Yoshihide; Kikuchi, Shoshi; Tomita, Masaru.

:: Bioinformatics, 巻 21, 番号 9, 01.05.2005, p. 1758-1763.

研究成果: Article

Kitagawa, N, Washio, T, Kosugi, S, Yamashita, T, Higashi, K, Yanagawa, H, Higo, K, Satoh, K, Ohtomo, Y, Sunako, T, Murakami, K, Matsubara, K, Kawai, J, Carninci, P, Hayashizaki, Y, Kikuchi, S & Tomita, M 2005, 'Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)', Bioinformatics, 巻. 21, 番号 9, pp. 1758-1763. https://doi.org/10.1093/bioinformatics/bti253
Kitagawa, Noriyuki ; Washio, Takanori ; Kosugi, Shunichi ; Yamashita, Tomoya ; Higashi, Kenji ; Yanagawa, Hiroshi ; Higo, Kenichi ; Satoh, Koji ; Ohtomo, Yasuhiro ; Sunako, Tomomi ; Murakami, Kazuo ; Matsubara, Kenichi ; Kawai, Jun ; Carninci, Piero ; Hayashizaki, Yoshihide ; Kikuchi, Shoshi ; Tomita, Masaru. / Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). :: Bioinformatics. 2005 ; 巻 21, 番号 9. pp. 1758-1763.
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AU - Washio, Takanori

AU - Kosugi, Shunichi

AU - Yamashita, Tomoya

AU - Higashi, Kenji

AU - Yanagawa, Hiroshi

AU - Higo, Kenichi

AU - Satoh, Koji

AU - Ohtomo, Yasuhiro

AU - Sunako, Tomomi

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AU - Matsubara, Kenichi

AU - Kawai, Jun

AU - Carninci, Piero

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AU - Tomita, Masaru

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