Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA

Naoki Iwanagra, Yuichiro Shibata, Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri

研究成果: Conference contribution

10 引用 (Scopus)

抜粋

A reconfigurable biochemical simulator by solving ordinary differential equations has received attention as a personal high speed environment for biochemical researchers. For efficient use of the reconfigurable hardware, static scheduling of high-throughput arithmetic pipeline structures is essential. This paper shows and compares some scheduling alternatives, and analyzes the tradeoffs between performance and hardware amount. Through the evaluation, it is shown that the sharing first scheduling reduces the hardware cost by 33.8% in average, with the up to 11.5% throughput degradation. Effects of sharing of rate law functions are also analyzed.

元の言語English
ホスト出版物のタイトルProceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL
ページ666-669
ページ数4
DOI
出版物ステータスPublished - 2005 12 1
イベント2005 International Conference on Field Programmable Logic and Applications, FPL - Tampere, Finland
継続期間: 2005 8 242005 8 26

出版物シリーズ

名前Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL
2005

Other

Other2005 International Conference on Field Programmable Logic and Applications, FPL
Finland
Tampere
期間05/8/2405/8/26

ASJC Scopus subject areas

  • Engineering(all)

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  • これを引用

    Iwanagra, N., Shibata, Y., Yoshimi, M., Osana, Y., Iwaoka, Y., Fukushima, T., Amano, H., Funahashi, A., Hiroi, N., Kitano, H., & Oguri, K. (2005). Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA. : Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL (pp. 666-669). [1515809] (Proceedings - 2005 International Conference on Field Programmable Logic and Applications, FPL; 巻数 2005). https://doi.org/10.1109/FPL.2005.1515809