FPGA-based HPRC for bioinformatics applications

Yoshiki Yamaguchi, Yasunori Osana, Masato Yoshimi, Hideharu Amano

研究成果: Chapter

抜粋

Bioinformatics is one of the most frequently applied fields in FPGAs. Some applications in this field can be efficiently implemented by systolic arrays, which are intrinsically suited to FPGA implementations. Others can be expressed as numerical computations which can parallelize through pipelining, instruction-level and data-level parallelism. This chapter covers two sample applications encountered in bioinformatics, namely homology searches and biochemical molecular simulations, and shows how FPGAs can be effectively harnessed to achieve higher performances compared to off-the-shelf microprocessor technologies.

元の言語English
ホスト出版物のタイトルHigh-Performance Computing Using FPGAs
出版者Springer New York
ページ137-175
ページ数39
9781461417910
ISBN(電子版)9781461417910
ISBN(印刷物)1461417902, 9781461417903
DOI
出版物ステータスPublished - 2014 3 1

ASJC Scopus subject areas

  • Engineering(all)

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  • これを引用

    Yamaguchi, Y., Osana, Y., Yoshimi, M., & Amano, H. (2014). FPGA-based HPRC for bioinformatics applications. : High-Performance Computing Using FPGAs (巻 9781461417910, pp. 137-175). Springer New York. https://doi.org/10.1007/978-1-4614-1791-0_5