Gene expression profiling of mouse embryos with microarrays

Alexei A. Sharov, Yulan Piao, Minoru S.H. Ko

研究成果: Chapter

2 被引用数 (Scopus)

抄録

Global expression profiling by DNA microarrays provides a snapshot of cell and tissue status and becomes an essential tool in biological and medical sciences. Typical questions that can be addressed by microarray analysis in developmental biology include: (1) to find a set of genes expressed in a specific cell type; (2) to identify genes expressed commonly in multiple cell types; (3) to follow the time-course changes of gene expression patterns; (4) to demonstrate cell's identity by showing similarities or differences among two or multiple cell types; (5) to find regulatory pathways and/or networks affected by gene manipulations, such as overexpression or repression of gene expression; (6) to find downstream target genes of transcription factors; (7) to find downstream target genes of cell signaling; (8) to examine the effects of environmental manipulation of cells on gene expression patterns; and (9) to find the effects of genetic manipulation in embryos and adults. Here, we describe strategies for executing these experiments and monitoring changes of cell state with gene expression microarrays in application to mouse embryology. Both statistical assessment and interpretation of data are discussed. We also present a protocol for performing microarray analysis on a small amount of embryonic materials.

本文言語English
ホスト出版物のタイトルMethods in Enzymology
出版社Academic Press Inc.
ページ511-541
ページ数31
C
DOI
出版ステータスPublished - 2010

出版物シリーズ

名前Methods in Enzymology
番号C
477
ISSN(印刷版)0076-6879

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology

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